miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 138736 0.68 0.781497
Target:  5'- cGGCGCGCuc--CGCGGCCc-CGGCGa -3'
miRNA:   3'- uUUGUGCGcuauGCGCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 138670 0.66 0.844906
Target:  5'- -uGCACGCGGUcguauuccgccaugcGCGUGGagucgaacgCGACGGCc -3'
miRNA:   3'- uuUGUGCGCUA---------------UGCGCCg--------GCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 138338 0.71 0.594482
Target:  5'- cGAgACGCGAg--GCGGCCGAgcCGGCc -3'
miRNA:   3'- uUUgUGCGCUaugCGCCGGCU--GCCGc -5'
5148 3' -57.5 NC_001798.1 + 138206 0.66 0.857362
Target:  5'- cGAACccaGgGAgggUGUGGUCGACGGCGg -3'
miRNA:   3'- -UUUGug-CgCUau-GCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 137046 0.66 0.849635
Target:  5'- aAAAC-CGCGAUACGuCGGCUGguccccGCaGCGc -3'
miRNA:   3'- -UUUGuGCGCUAUGC-GCCGGC------UGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 135979 0.68 0.73441
Target:  5'- gAGACGCGUcGUGCGCGuaugucCCGGgGGCGg -3'
miRNA:   3'- -UUUGUGCGcUAUGCGCc-----GGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 135797 0.68 0.744036
Target:  5'- gAGGC-CGUG-UGCGCGGCCcGgGGCGu -3'
miRNA:   3'- -UUUGuGCGCuAUGCGCCGGcUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 135556 0.67 0.825326
Target:  5'- -uGCGCGCcGUACuuuCGGCCaACGGCa -3'
miRNA:   3'- uuUGUGCGcUAUGc--GCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 134457 0.67 0.808253
Target:  5'- cGAGCACccCGGcGCGCGGUuggCGugGGCGc -3'
miRNA:   3'- -UUUGUGc-GCUaUGCGCCG---GCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 133449 0.74 0.4147
Target:  5'- gGAGgACGCGGUuaagcGCGUGGCCGACGcccugaGCGg -3'
miRNA:   3'- -UUUgUGCGCUA-----UGCGCCGGCUGC------CGC- -5'
5148 3' -57.5 NC_001798.1 + 132129 0.69 0.684159
Target:  5'- -uGCAgGCGGcccUGCGCcgccgggGGCCGGCgGGCGg -3'
miRNA:   3'- uuUGUgCGCU---AUGCG-------CCGGCUG-CCGC- -5'
5148 3' -57.5 NC_001798.1 + 129299 0.66 0.83361
Target:  5'- --cCGCGCGG-GCGCGGagGAgGGCGu -3'
miRNA:   3'- uuuGUGCGCUaUGCGCCggCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 128672 0.68 0.753566
Target:  5'- -uGCACGCG-UGCGgGGUCcucaugGACGGCc -3'
miRNA:   3'- uuUGUGCGCuAUGCgCCGG------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 122807 0.68 0.781497
Target:  5'- -uGCugGCGcaucUGgGCGGCCagggcggucgggGGCGGCGg -3'
miRNA:   3'- uuUGugCGCu---AUgCGCCGG------------CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 122226 0.7 0.655024
Target:  5'- uGGAC-CGCGGgugggaaGCucuGGCCGGCGGCGa -3'
miRNA:   3'- -UUUGuGCGCUaug----CG---CCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 122064 0.66 0.849635
Target:  5'- uGGGCGCGuCGG-ACGCGGa-GGCGGUGc -3'
miRNA:   3'- -UUUGUGC-GCUaUGCGCCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 121976 0.72 0.505853
Target:  5'- -cGCGCGCGccccaagcACGCGGCCucCGGCGu -3'
miRNA:   3'- uuUGUGCGCua------UGCGCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 121621 1.05 0.003811
Target:  5'- cAAACACGCGAUACGCGGCCGACGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 121543 0.68 0.772306
Target:  5'- cGGCGCuGCGccugGCGUGGggcCCGugGGCGa -3'
miRNA:   3'- uUUGUG-CGCua--UGCGCC---GGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 117758 0.7 0.655024
Target:  5'- cGGCGCGCccuuCGCGGCC-ACGGCc -3'
miRNA:   3'- uUUGUGCGcuauGCGCCGGcUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.