miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 154395 0.74 0.406145
Target:  5'- gGGGgGCGCGA-AgGCGGgCGGCGGCGg -3'
miRNA:   3'- -UUUgUGCGCUaUgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 154092 0.76 0.315417
Target:  5'- gGAGCGC-CGggGCGCGGCCGgcgccggggaccccgGCGGCGg -3'
miRNA:   3'- -UUUGUGcGCuaUGCGCCGGC---------------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 154042 0.72 0.554557
Target:  5'- gGAGCGCGcCGggGCGCGGCaCGGCuggagcgccggGGCGc -3'
miRNA:   3'- -UUUGUGC-GCuaUGCGCCG-GCUG-----------CCGC- -5'
5148 3' -57.5 NC_001798.1 + 153960 0.74 0.406145
Target:  5'- -cGCAggaGCGAggACGCGGCCGGCGcGCu -3'
miRNA:   3'- uuUGUg--CGCUa-UGCGCCGGCUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 153826 0.69 0.705048
Target:  5'- cAGGCGCgGCG-UGCGgGGCCucCGGCGc -3'
miRNA:   3'- -UUUGUG-CGCuAUGCgCCGGcuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 153773 0.73 0.449995
Target:  5'- gGGGCGCuGCGGcccgcgcuccuUGCGCGG-CGGCGGCGg -3'
miRNA:   3'- -UUUGUG-CGCU-----------AUGCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 153073 0.66 0.872215
Target:  5'- gGGGCGgGCGGa--GCGGCgGgGCGGCGc -3'
miRNA:   3'- -UUUGUgCGCUaugCGCCGgC-UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 153037 0.72 0.534882
Target:  5'- -cGCGCgGCGGcGCGCGGuuGGcCGGCGc -3'
miRNA:   3'- uuUGUG-CGCUaUGCGCCggCU-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150570 0.73 0.468251
Target:  5'- gGGGCcCGCGGggcgGCGCGGa-GACGGCGg -3'
miRNA:   3'- -UUUGuGCGCUa---UGCGCCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150448 0.79 0.22521
Target:  5'- cGGACGCGCGggGCGaCGGCCGcgcgggggcgcGCGGCGc -3'
miRNA:   3'- -UUUGUGCGCuaUGC-GCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150347 0.82 0.144132
Target:  5'- gGGGCGCGCGGUGCGCguccaccggcacGGCgGGCGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGCG------------CCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 149470 0.66 0.864891
Target:  5'- --cCACGCGGgggcCGCGGCCcGCaGCa -3'
miRNA:   3'- uuuGUGCGCUau--GCGCCGGcUGcCGc -5'
5148 3' -57.5 NC_001798.1 + 149240 0.66 0.857362
Target:  5'- uGGCcCGCGGggGCGUcGCCGGcCGGCGc -3'
miRNA:   3'- uUUGuGCGCUa-UGCGcCGGCU-GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 147231 0.67 0.826163
Target:  5'- gGAGCGCGgGGgccccggggccccggGC-CGcGCCGGCGGCGu -3'
miRNA:   3'- -UUUGUGCgCUa--------------UGcGC-CGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 146504 0.67 0.816872
Target:  5'- cGGCaACGCcccGCGcCGGCCG-CGGCGg -3'
miRNA:   3'- uUUG-UGCGcuaUGC-GCCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 145798 0.78 0.24783
Target:  5'- gGAGCGCGCGGgcggcagaaACGCgGGCgCGGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCUa--------UGCG-CCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 144741 0.74 0.4147
Target:  5'- ---gACG-GGUGCGUGGCUGACGGCc -3'
miRNA:   3'- uuugUGCgCUAUGCGCCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 144281 0.66 0.867845
Target:  5'- gAAACGCGCGccgaaACGCGGCCcaguccaggggcacgGAaguCGGCa -3'
miRNA:   3'- -UUUGUGCGCua---UGCGCCGG---------------CU---GCCGc -5'
5148 3' -57.5 NC_001798.1 + 141589 0.69 0.705048
Target:  5'- cGGCACGCGAcggccgGCGUGGCCGAguucuUGGa- -3'
miRNA:   3'- uUUGUGCGCUa-----UGCGCCGGCU-----GCCgc -5'
5148 3' -57.5 NC_001798.1 + 139341 0.76 0.319714
Target:  5'- -cGCGCGCGcUGUGCGGCCauGGCGGCGu -3'
miRNA:   3'- uuUGUGCGCuAUGCGCCGG--CUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.