miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 121621 1.05 0.003811
Target:  5'- cAAACACGCGAUACGCGGCCGACGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 61198 0.66 0.864891
Target:  5'- -uGCAC-CG--GCGCGcGCCGGCGGUu -3'
miRNA:   3'- uuUGUGcGCuaUGCGC-CGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 19841 0.66 0.864891
Target:  5'- ---uGCGCGAcACGCGcCCGG-GGCGg -3'
miRNA:   3'- uuugUGCGCUaUGCGCcGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 113487 0.66 0.862653
Target:  5'- ---uGCGUGAUcaugggcgGCGCGGCCcugugcgcccugguGGCGGCc -3'
miRNA:   3'- uuugUGCGCUA--------UGCGCCGG--------------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 69508 0.66 0.857362
Target:  5'- aGGACGCGCcgGAgcgggGCGUGGCCcGCGaGCu -3'
miRNA:   3'- -UUUGUGCG--CUa----UGCGCCGGcUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 97648 0.66 0.857362
Target:  5'- cGGACGUGCGGga-GC-GCCGGCGGCu -3'
miRNA:   3'- -UUUGUGCGCUaugCGcCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 43509 0.66 0.857362
Target:  5'- -uGCGCGC---GCGCaGGuaGGCGGCGg -3'
miRNA:   3'- uuUGUGCGcuaUGCG-CCggCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2755 0.66 0.857362
Target:  5'- aGAGCAgGUc---CGCGGCggCGGCGGCGg -3'
miRNA:   3'- -UUUGUgCGcuauGCGCCG--GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 92976 0.66 0.857362
Target:  5'- uGGACGcCGUGGcccGCGCGGCCGcccaccUGGCGu -3'
miRNA:   3'- -UUUGU-GCGCUa--UGCGCCGGCu-----GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 71128 0.66 0.864891
Target:  5'- uGGCGCGCGugcggacggACGCGGCCgucuucgaccccGACGuGCc -3'
miRNA:   3'- uUUGUGCGCua-------UGCGCCGG------------CUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 149470 0.66 0.864891
Target:  5'- --cCACGCGGgggcCGCGGCCcGCaGCa -3'
miRNA:   3'- uuuGUGCGCUau--GCGCCGGcUGcCGc -5'
5148 3' -57.5 NC_001798.1 + 144281 0.66 0.867845
Target:  5'- gAAACGCGCGccgaaACGCGGCCcaguccaggggcacgGAaguCGGCa -3'
miRNA:   3'- -UUUGUGCGCua---UGCGCCGG---------------CU---GCCGc -5'
5148 3' -57.5 NC_001798.1 + 153073 0.66 0.872215
Target:  5'- gGGGCGgGCGGa--GCGGCgGgGCGGCGc -3'
miRNA:   3'- -UUUGUgCGCUaugCGCCGgC-UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 100277 0.66 0.872215
Target:  5'- cGAUGCGCGucagcuCGCGGCCgggGACGuGCu -3'
miRNA:   3'- uUUGUGCGCuau---GCGCCGG---CUGC-CGc -5'
5148 3' -57.5 NC_001798.1 + 84723 0.66 0.872215
Target:  5'- -cGCACGCGGUGuccUGCGuaUguggGGCGGCGg -3'
miRNA:   3'- uuUGUGCGCUAU---GCGCcgG----CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 75558 0.66 0.872215
Target:  5'- --cCugGCGG-ACGUGGCCGcccacCGGCc -3'
miRNA:   3'- uuuGugCGCUaUGCGCCGGCu----GCCGc -5'
5148 3' -57.5 NC_001798.1 + 52973 0.66 0.872215
Target:  5'- gAGGCGCGCGAc-CG-GGCUgGGCGGCc -3'
miRNA:   3'- -UUUGUGCGCUauGCgCCGG-CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 36131 0.66 0.872215
Target:  5'- -cGC-CGCGAUcccgccggugggGCGCGGC-GGCGGuCGg -3'
miRNA:   3'- uuUGuGCGCUA------------UGCGCCGgCUGCC-GC- -5'
5148 3' -57.5 NC_001798.1 + 25595 0.66 0.872215
Target:  5'- uGGC-CGCGGgcCGC-GCCGGgGGCGg -3'
miRNA:   3'- uUUGuGCGCUauGCGcCGGCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 102202 0.66 0.872215
Target:  5'- uGGCGCGCGGcGCGCcgggaGUCGACcgGGCGc -3'
miRNA:   3'- uUUGUGCGCUaUGCGc----CGGCUG--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.