miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 57 0.74 0.406145
Target:  5'- gGGGgGCGCGA-AgGCGGgCGGCGGCGg -3'
miRNA:   3'- -UUUgUGCGCUaUgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 1217 0.74 0.423365
Target:  5'- --cCGCGCGGccCGCGGCCGACGcccaGCGu -3'
miRNA:   3'- uuuGUGCGCUauGCGCCGGCUGC----CGC- -5'
5148 3' -57.5 NC_001798.1 + 1603 0.74 0.43834
Target:  5'- -cGCACGCGGUAccgcacguuggcccCGCGGCagaggcgcagCGGCGGCGc -3'
miRNA:   3'- uuUGUGCGCUAU--------------GCGCCG----------GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 1662 0.75 0.365079
Target:  5'- cAGGCGCGCG-UGCGCGGCCuccacGCGcGCGa -3'
miRNA:   3'- -UUUGUGCGCuAUGCGCCGGc----UGC-CGC- -5'
5148 3' -57.5 NC_001798.1 + 1988 0.69 0.721768
Target:  5'- cGGGgGCGCGGUccaguugcccgcccAgGCGGCCG-UGGCGg -3'
miRNA:   3'- -UUUgUGCGCUA--------------UgCGCCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2101 0.68 0.781497
Target:  5'- gGGGCcCGCccccgGCGCGGCCcGCGGCc -3'
miRNA:   3'- -UUUGuGCGcua--UGCGCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 2228 0.69 0.724697
Target:  5'- cGAgGCGCGcaGCG-GGCCGaagGCGGCGg -3'
miRNA:   3'- uUUgUGCGCuaUGCgCCGGC---UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2377 0.68 0.772306
Target:  5'- cGGCcCGCGggGCGCaguaGGCCuccagGGCGGCGg -3'
miRNA:   3'- uUUGuGCGCuaUGCG----CCGG-----CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2416 0.67 0.808253
Target:  5'- aGGGCGCcgGCGugugGCugggccccgGCGGCUGGCGGCGc -3'
miRNA:   3'- -UUUGUG--CGCua--UG---------CGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2498 0.78 0.266004
Target:  5'- cAGCGcCGCGggGCGCGGCggccgCGGCGGCGg -3'
miRNA:   3'- uUUGU-GCGCuaUGCGCCG-----GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2537 0.67 0.816872
Target:  5'- cGGgGCGgGggGCGCGGCCcccgcgggaggGGCGGCc -3'
miRNA:   3'- uUUgUGCgCuaUGCGCCGG-----------CUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 2607 0.73 0.496326
Target:  5'- gGGGgGCGCGggGCGCcGcCCGGCGGCGc -3'
miRNA:   3'- -UUUgUGCGCuaUGCGcC-GGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2686 0.69 0.685158
Target:  5'- cGGGCGCgGCGAgcgaGuCGGCCG-CGGCGa -3'
miRNA:   3'- -UUUGUG-CGCUaug-C-GCCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2755 0.66 0.857362
Target:  5'- aGAGCAgGUc---CGCGGCggCGGCGGCGg -3'
miRNA:   3'- -UUUGUgCGcuauGCGCCG--GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2845 0.69 0.714907
Target:  5'- cGGCGCGC---ACgGCGGCC-ACGGCGg -3'
miRNA:   3'- uUUGUGCGcuaUG-CGCCGGcUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2952 0.69 0.705048
Target:  5'- cAGGCGCGCag-GCGgGGCgCGuCGGCGu -3'
miRNA:   3'- -UUUGUGCGcuaUGCgCCG-GCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 3009 0.69 0.705048
Target:  5'- ---gGCGCGGggGCGCGGCgGGCcgGGCu -3'
miRNA:   3'- uuugUGCGCUa-UGCGCCGgCUG--CCGc -5'
5148 3' -57.5 NC_001798.1 + 3280 0.66 0.849635
Target:  5'- -cGCGCGCucgucggccgGcgACGCcgccGCCGACGGCa -3'
miRNA:   3'- uuUGUGCG----------CuaUGCGc---CGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 3479 0.69 0.695129
Target:  5'- -uGCGCGCGGUcguaGCGGCgGcucauggccACGGCGg -3'
miRNA:   3'- uuUGUGCGCUAug--CGCCGgC---------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 3947 0.7 0.624729
Target:  5'- uAGCGCGCGuagaagGCGCcggaGGCCGcguCGGCGu -3'
miRNA:   3'- uUUGUGCGCua----UGCG----CCGGCu--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.