miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 121621 1.05 0.003811
Target:  5'- cAAACACGCGAUACGCGGCCGACGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 117666 0.85 0.095429
Target:  5'- cAACcCGCGGggacGCGCGGCCGGCGGCGu -3'
miRNA:   3'- uUUGuGCGCUa---UGCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150347 0.82 0.144132
Target:  5'- gGGGCGCGCGGUGCGCguccaccggcacGGCgGGCGGCGc -3'
miRNA:   3'- -UUUGUGCGCUAUGCG------------CCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 110999 0.81 0.155497
Target:  5'- cAGGCGCGCGGUauGCGUGGCCG-CGGCc -3'
miRNA:   3'- -UUUGUGCGCUA--UGCGCCGGCuGCCGc -5'
5148 3' -57.5 NC_001798.1 + 66624 0.81 0.167666
Target:  5'- ---aGCGCGGgcuCGCGGUCGACGGCGu -3'
miRNA:   3'- uuugUGCGCUau-GCGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 91800 0.8 0.189849
Target:  5'- uGACGCGCGggGCGUGGggaCCGugGGCGg -3'
miRNA:   3'- uUUGUGCGCuaUGCGCC---GGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 25953 0.79 0.219836
Target:  5'- ---uGCGCcGUGCGCuGGCCGGCGGCGc -3'
miRNA:   3'- uuugUGCGcUAUGCG-CCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 150448 0.79 0.22521
Target:  5'- cGGACGCGCGggGCGaCGGCCGcgcgggggcgcGCGGCGc -3'
miRNA:   3'- -UUUGUGCGCuaUGC-GCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 145798 0.78 0.24783
Target:  5'- gGAGCGCGCGGgcggcagaaACGCgGGCgCGGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCUa--------UGCG-CCG-GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2498 0.78 0.266004
Target:  5'- cAGCGcCGCGggGCGCGGCggccgCGGCGGCGg -3'
miRNA:   3'- uUUGU-GCGCuaUGCGCCG-----GCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 96974 0.77 0.27871
Target:  5'- ---gGCGCGGacCGCGGCgGGCGGCGg -3'
miRNA:   3'- uuugUGCGCUauGCGCCGgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 24822 0.77 0.285242
Target:  5'- ---uGCGCGGggaccugcGCGUGGCCGGCGGCa -3'
miRNA:   3'- uuugUGCGCUa-------UGCGCCGGCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 31346 0.77 0.285242
Target:  5'- gGGGCGCGCGcagGCGCGGCggGugGGCGa -3'
miRNA:   3'- -UUUGUGCGCua-UGCGCCGg-CugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 4356 0.77 0.298667
Target:  5'- cGAGCGCcgGCGGgggGCGC-GCCGGCGGCGg -3'
miRNA:   3'- -UUUGUG--CGCUa--UGCGcCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 154092 0.76 0.315417
Target:  5'- gGAGCGC-CGggGCGCGGCCGgcgccggggaccccgGCGGCGg -3'
miRNA:   3'- -UUUGUGcGCuaUGCGCCGGC---------------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 139341 0.76 0.319714
Target:  5'- -cGCGCGCGcUGUGCGGCCauGGCGGCGu -3'
miRNA:   3'- uuUGUGCGCuAUGCGCCGG--CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 68455 0.76 0.334352
Target:  5'- cGAGCACcgcggggauuGCGAgcuCGCGGCCGggACGGCGa -3'
miRNA:   3'- -UUUGUG----------CGCUau-GCGCCGGC--UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 109378 0.75 0.357217
Target:  5'- gGAGCA-GCGGgcUGCGCGGCCGAcuCGGUGu -3'
miRNA:   3'- -UUUGUgCGCU--AUGCGCCGGCU--GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 97462 0.75 0.357217
Target:  5'- -uGCugGCGcgGCugGgGGCCGGCGGCGc -3'
miRNA:   3'- uuUGugCGCuaUG--CgCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 1662 0.75 0.365079
Target:  5'- cAGGCGCGCG-UGCGCGGCCuccacGCGcGCGa -3'
miRNA:   3'- -UUUGUGCGCuAUGCGCCGGc----UGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.