miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 39707 0.67 0.808253
Target:  5'- cGGGgAUGCGGUGCcuUGGUCGACGGgGg -3'
miRNA:   3'- -UUUgUGCGCUAUGc-GCCGGCUGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 134457 0.67 0.808253
Target:  5'- cGAGCACccCGGcGCGCGGUuggCGugGGCGc -3'
miRNA:   3'- -UUUGUGc-GCUaUGCGCCG---GCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 59989 0.67 0.799479
Target:  5'- cGACAcCGCGu--UGgGGCCGGUGGCGg -3'
miRNA:   3'- uUUGU-GCGCuauGCgCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 77252 0.67 0.799479
Target:  5'- ---gACGCGGUgucggcccuggGCGCGGCCGcCcGCGa -3'
miRNA:   3'- uuugUGCGCUA-----------UGCGCCGGCuGcCGC- -5'
5148 3' -57.5 NC_001798.1 + 86258 0.67 0.799479
Target:  5'- gAAGCACGgcCGGggGCGCGGgcgcaCCGGCGGgGa -3'
miRNA:   3'- -UUUGUGC--GCUa-UGCGCC-----GGCUGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 47920 0.67 0.799479
Target:  5'- uGACGCGCGggGCGCcuaaGGCCuccgcGAcccCGGCGa -3'
miRNA:   3'- uUUGUGCGCuaUGCG----CCGG-----CU---GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 58974 0.67 0.799479
Target:  5'- -cACACGCGucg-GCGGCCG--GGCGa -3'
miRNA:   3'- uuUGUGCGCuaugCGCCGGCugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 32784 0.67 0.799479
Target:  5'- aGGGCGCGCcc-GCGcCGGCCGGCGaCGc -3'
miRNA:   3'- -UUUGUGCGcuaUGC-GCCGGCUGCcGC- -5'
5148 3' -57.5 NC_001798.1 + 98621 0.67 0.790558
Target:  5'- --cCGCGCcucGGgcgGCGUGGCCGcgaccgucGCGGCGa -3'
miRNA:   3'- uuuGUGCG---CUa--UGCGCCGGC--------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 52412 0.67 0.787853
Target:  5'- uGAACGcCGUGcuggGCGCGGCCGuguacgcgcugcacACGGCc -3'
miRNA:   3'- -UUUGU-GCGCua--UGCGCCGGC--------------UGCCGc -5'
5148 3' -57.5 NC_001798.1 + 48673 0.68 0.781497
Target:  5'- cGAGCGCGgGggACG-GGCCGcccggaGCGGUGg -3'
miRNA:   3'- -UUUGUGCgCuaUGCgCCGGC------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 43055 0.68 0.781497
Target:  5'- cGGCGCGUGAgcCGcCGGCCGAgCGcGCc -3'
miRNA:   3'- uUUGUGCGCUauGC-GCCGGCU-GC-CGc -5'
5148 3' -57.5 NC_001798.1 + 8877 0.68 0.781497
Target:  5'- ---gACGCGGaaggGCGCuGGCgGAgGGCGg -3'
miRNA:   3'- uuugUGCGCUa---UGCG-CCGgCUgCCGC- -5'
5148 3' -57.5 NC_001798.1 + 2101 0.68 0.781497
Target:  5'- gGGGCcCGCccccgGCGCGGCCcGCGGCc -3'
miRNA:   3'- -UUUGuGCGcua--UGCGCCGGcUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 52515 0.68 0.781497
Target:  5'- cGACGCgGCGGccGCGCGcGCCGugcUGGCGa -3'
miRNA:   3'- uUUGUG-CGCUa-UGCGC-CGGCu--GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 102726 0.68 0.781497
Target:  5'- cGACgACGCGAcuugACGCGcaCgGACGGCGa -3'
miRNA:   3'- uUUG-UGCGCUa---UGCGCc-GgCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 122807 0.68 0.781497
Target:  5'- -uGCugGCGcaucUGgGCGGCCagggcggucgggGGCGGCGg -3'
miRNA:   3'- uuUGugCGCu---AUgCGCCGG------------CUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 53106 0.68 0.781497
Target:  5'- cGGGCGCGCGGcGCgagcucccuGCGGCUGgcGCGGUGc -3'
miRNA:   3'- -UUUGUGCGCUaUG---------CGCCGGC--UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 77703 0.68 0.781497
Target:  5'- gGGGCAgcaGCGA-GCGCugGGCCGcCGGCGu -3'
miRNA:   3'- -UUUGUg--CGCUaUGCG--CCGGCuGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 138736 0.68 0.781497
Target:  5'- cGGCGCGCuc--CGCGGCCc-CGGCGa -3'
miRNA:   3'- uUUGUGCGcuauGCGCCGGcuGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.