miRNA display CGI


Results 61 - 80 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5148 3' -57.5 NC_001798.1 + 30896 0.67 0.816872
Target:  5'- cGGCACGgacgacgaggaCGAUgACcUGGCCGACGGUGa -3'
miRNA:   3'- uUUGUGC-----------GCUA-UGcGCCGGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 31346 0.77 0.285242
Target:  5'- gGGGCGCGCGcagGCGCGGCggGugGGCGa -3'
miRNA:   3'- -UUUGUGCGCua-UGCGCCGg-CugCCGC- -5'
5148 3' -57.5 NC_001798.1 + 31656 0.66 0.83361
Target:  5'- ---aGCGCGG-ACGCGGCCG--GGCc -3'
miRNA:   3'- uuugUGCGCUaUGCGCCGGCugCCGc -5'
5148 3' -57.5 NC_001798.1 + 32346 0.69 0.705048
Target:  5'- gGAAgACGCGccACGCGGagGGCGGCc -3'
miRNA:   3'- -UUUgUGCGCuaUGCGCCggCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 32784 0.67 0.799479
Target:  5'- aGGGCGCGCcc-GCGcCGGCCGGCGaCGc -3'
miRNA:   3'- -UUUGUGCGcuaUGC-GCCGGCUGCcGC- -5'
5148 3' -57.5 NC_001798.1 + 34606 0.66 0.83361
Target:  5'- uGGgACGCGGgcaaaGgGCGG-CGGCGGCGg -3'
miRNA:   3'- uUUgUGCGCUa----UgCGCCgGCUGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 34952 0.68 0.733442
Target:  5'- cGAACGCGCGGcGCcggaggggGCGGCCGccgagguGCGGgGg -3'
miRNA:   3'- -UUUGUGCGCUaUG--------CGCCGGC-------UGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 35144 0.68 0.746905
Target:  5'- aGGGCGCGcCGGUGCGCGGagcagccuuccuucuCCGGagucccucucgauCGGCGg -3'
miRNA:   3'- -UUUGUGC-GCUAUGCGCC---------------GGCU-------------GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 35275 0.69 0.695129
Target:  5'- cAACACGCGG-GCGgGGCucgggcucucCGGCGGCu -3'
miRNA:   3'- uUUGUGCGCUaUGCgCCG----------GCUGCCGc -5'
5148 3' -57.5 NC_001798.1 + 36131 0.66 0.872215
Target:  5'- -cGC-CGCGAUcccgccggugggGCGCGGC-GGCGGuCGg -3'
miRNA:   3'- uuUGuGCGCUA------------UGCGCCGgCUGCC-GC- -5'
5148 3' -57.5 NC_001798.1 + 36489 0.68 0.753566
Target:  5'- gGGGCGCcgGCGcgACGCGGgCGGCcgGGCGn -3'
miRNA:   3'- -UUUGUG--CGCuaUGCGCCgGCUG--CCGC- -5'
5148 3' -57.5 NC_001798.1 + 36520 0.71 0.604547
Target:  5'- gGGGCGCGCG----GCGGCCGggcgggggcgcGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaugCGCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 36562 0.71 0.604547
Target:  5'- gGGGCGCGCG----GCGGCCGggcgggggcgcGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaugCGCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 36604 0.71 0.604547
Target:  5'- gGGGCGCGCG----GCGGCCGggcgggggcgcGCGGCGg -3'
miRNA:   3'- -UUUGUGCGCuaugCGCCGGC-----------UGCCGC- -5'
5148 3' -57.5 NC_001798.1 + 38786 0.69 0.685158
Target:  5'- cGACACGCcgcgcucgACGCGGuuGGCgaGGCGg -3'
miRNA:   3'- uUUGUGCGcua-----UGCGCCggCUG--CCGC- -5'
5148 3' -57.5 NC_001798.1 + 39707 0.67 0.808253
Target:  5'- cGGGgAUGCGGUGCcuUGGUCGACGGgGg -3'
miRNA:   3'- -UUUgUGCGCUAUGc-GCCGGCUGCCgC- -5'
5148 3' -57.5 NC_001798.1 + 41157 0.73 0.459075
Target:  5'- aGAACACGCucGAcacUAUGCGGCCGGCGuaGu -3'
miRNA:   3'- -UUUGUGCG--CU---AUGCGCCGGCUGCcgC- -5'
5148 3' -57.5 NC_001798.1 + 41424 0.66 0.841715
Target:  5'- -uAUugGCGuagcagACGCGGgCGugGGgGg -3'
miRNA:   3'- uuUGugCGCua----UGCGCCgGCugCCgC- -5'
5148 3' -57.5 NC_001798.1 + 42298 0.71 0.584444
Target:  5'- -cGCACGCGGagccguCGgGGCCGAucuUGGCGa -3'
miRNA:   3'- uuUGUGCGCUau----GCgCCGGCU---GCCGC- -5'
5148 3' -57.5 NC_001798.1 + 42335 0.7 0.644933
Target:  5'- cGGCAaGCGcagGCuGUGGCCGugGGCGu -3'
miRNA:   3'- uUUGUgCGCua-UG-CGCCGGCugCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.