miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 50099 0.71 0.603631
Target:  5'- aGGCCGGGCUGguGGCGcCGCGCa--- -3'
miRNA:   3'- gCCGGCCCGGUacUUGC-GCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 51822 0.66 0.887246
Target:  5'- aCGGgUGGGUCugcgGGACGCGC-CUg-- -3'
miRNA:   3'- -GCCgGCCCGGua--CUUGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 52424 0.67 0.834392
Target:  5'- uGGgCGcGGCCGUGuACGCGCuGCa--- -3'
miRNA:   3'- gCCgGC-CCGGUACuUGCGCG-UGaaac -5'
5149 3' -56.9 NC_001798.1 + 55492 0.68 0.800049
Target:  5'- aGGCgagaagCGGGaCCGUcGGACGCGCGCc--- -3'
miRNA:   3'- gCCG------GCCC-GGUA-CUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 56248 0.66 0.876066
Target:  5'- gCGGCCGGGCCcgGccccggaguuaccgcAGCcgacgauaGCGCACc--- -3'
miRNA:   3'- -GCCGGCCCGGuaC---------------UUG--------CGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 58706 0.67 0.82606
Target:  5'- gCGGCgCGGGggucgauccaCCAguAGCGCGCACUg-- -3'
miRNA:   3'- -GCCG-GCCC----------GGUacUUGCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 58878 0.66 0.858267
Target:  5'- gGGucCCGGGCCcgGAACccccggagGCGCGCc--- -3'
miRNA:   3'- gCC--GGCCCGGuaCUUG--------CGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 58985 0.66 0.87962
Target:  5'- gCGGCCGGGC---GAACGCgggggggGCGCg--- -3'
miRNA:   3'- -GCCGGCCCGguaCUUGCG-------CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 63714 0.68 0.781943
Target:  5'- uGGCCGGGUgGUuGAugGUGCGg---- -3'
miRNA:   3'- gCCGGCCCGgUA-CUugCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 64725 0.67 0.808881
Target:  5'- gGGCCGaGGCggcggugggCAUGAGCGCGaugaACUg-- -3'
miRNA:   3'- gCCGGC-CCG---------GUACUUGCGCg---UGAaac -5'
5149 3' -56.9 NC_001798.1 + 64858 0.68 0.800049
Target:  5'- gCGGCC-GGCCcgGAcAUGCuGCGCUUa- -3'
miRNA:   3'- -GCCGGcCCGGuaCU-UGCG-CGUGAAac -5'
5149 3' -56.9 NC_001798.1 + 66774 0.68 0.769884
Target:  5'- gCGGCgUGGGCCGcgGAaucggagucggccgACGCGCGCg--- -3'
miRNA:   3'- -GCCG-GCCCGGUa-CU--------------UGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 69162 0.67 0.808881
Target:  5'- cCGGCCGGGCgGagcccGAugGCGgGCcaggUGg -3'
miRNA:   3'- -GCCGGCCCGgUa----CUugCGCgUGaa--AC- -5'
5149 3' -56.9 NC_001798.1 + 72851 0.66 0.86583
Target:  5'- gCGGCaCGGGCCccGAGCGgGUg----- -3'
miRNA:   3'- -GCCG-GCCCGGuaCUUGCgCGugaaac -5'
5149 3' -56.9 NC_001798.1 + 72904 0.73 0.494654
Target:  5'- uGGaaGGGCCugcagacgGAGCGCGCGCUggucgUGg -3'
miRNA:   3'- gCCggCCCGGua------CUUGCGCGUGAa----AC- -5'
5149 3' -56.9 NC_001798.1 + 73947 0.66 0.873184
Target:  5'- uGGagggGGGCgaGUGGACGCGCGCg--- -3'
miRNA:   3'- gCCgg--CCCGg-UACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 74108 0.67 0.834392
Target:  5'- aCGGCgGGGCUGcUGGAgacgcaaugcccCGCGCACa--- -3'
miRNA:   3'- -GCCGgCCCGGU-ACUU------------GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 74154 0.66 0.858267
Target:  5'- cCGGCCccuGGGCCAUGcGGC-CGCugUc-- -3'
miRNA:   3'- -GCCGG---CCCGGUAC-UUGcGCGugAaac -5'
5149 3' -56.9 NC_001798.1 + 77567 0.69 0.714853
Target:  5'- aCGGCCGGGgaCCAUucccccagcGGGCGCGCcCUg-- -3'
miRNA:   3'- -GCCGGCCC--GGUA---------CUUGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 78851 0.66 0.858267
Target:  5'- gCGGCaCGccGGCCGccUGGGgGCGCuCUUUGa -3'
miRNA:   3'- -GCCG-GC--CCGGU--ACUUgCGCGuGAAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.