miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 26197 0.76 0.362764
Target:  5'- aCGGCCGGGCCGccgccucGGGCGCGgGCg--- -3'
miRNA:   3'- -GCCGGCCCGGUa------CUUGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 26289 0.67 0.842542
Target:  5'- gCGcGCUGGgGCC-UGGGCGCGcCGCUg-- -3'
miRNA:   3'- -GC-CGGCC-CGGuACUUGCGC-GUGAaac -5'
5149 3' -56.9 NC_001798.1 + 29975 0.66 0.858267
Target:  5'- gCGGUCGGGggacccCCGUGGGcCGUGCGCc--- -3'
miRNA:   3'- -GCCGGCCC------GGUACUU-GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 31335 0.69 0.704917
Target:  5'- gCGGCC-GGCgGgGGGCGCGCGCa--- -3'
miRNA:   3'- -GCCGGcCCGgUaCUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 31665 0.76 0.358017
Target:  5'- gCGGCCGGGCCcgcgccgcccgccguGccggUGGACGCGCACc--- -3'
miRNA:   3'- -GCCGGCCCGG---------------U----ACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 31763 0.71 0.599572
Target:  5'- gGGCCGGGCaggcgcgaccGACGCGCGCg--- -3'
miRNA:   3'- gCCGGCCCGguac------UUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 32003 0.66 0.86583
Target:  5'- cCGcGCCGGGCCccGGACuCGgACUcgGg -3'
miRNA:   3'- -GC-CGGCCCGGuaCUUGcGCgUGAaaC- -5'
5149 3' -56.9 NC_001798.1 + 34054 0.75 0.387146
Target:  5'- aCGGCUGuGGCCggGcACGCGC-CUUUGg -3'
miRNA:   3'- -GCCGGC-CCGGuaCuUGCGCGuGAAAC- -5'
5149 3' -56.9 NC_001798.1 + 36509 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36530 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36551 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36572 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36593 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36614 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36635 0.74 0.457183
Target:  5'- gCGGCCGGGC---GGGgGCGCGCUUUc -3'
miRNA:   3'- -GCCGGCCCGguaCUUgCGCGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 39155 0.68 0.791067
Target:  5'- aGGCuCGGGCCGUGAGCGaC-CAg---- -3'
miRNA:   3'- gCCG-GCCCGGUACUUGC-GcGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 41801 0.69 0.72472
Target:  5'- aGGuCCGGGCCGU---CGCGCgACUUg- -3'
miRNA:   3'- gCC-GGCCCGGUAcuuGCGCG-UGAAac -5'
5149 3' -56.9 NC_001798.1 + 42345 0.72 0.5733
Target:  5'- aGGCUGuGGCCGUGGGCGUaCACg--- -3'
miRNA:   3'- gCCGGC-CCGGUACUUGCGcGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 43491 0.67 0.808881
Target:  5'- gGGCCgccgGGGCauaCGUGcGCGCGCGCa--- -3'
miRNA:   3'- gCCGG----CCCG---GUACuUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 47828 0.66 0.887246
Target:  5'- aCGGCCccGGCCcc--GCGCGCGCUc-- -3'
miRNA:   3'- -GCCGGc-CCGGuacuUGCGCGUGAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.