miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 135534 0.66 0.880324
Target:  5'- -cGCCGGGCCcucgaggcguccGUGcGCGCcGUACUUUc -3'
miRNA:   3'- gcCGGCCCGG------------UACuUGCG-CGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 122561 0.66 0.880324
Target:  5'- gCGGCCGagguGGCCuucguCGCGCGCa--- -3'
miRNA:   3'- -GCCGGC----CCGGuacuuGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 96917 0.66 0.87962
Target:  5'- -cGCCGGGCUGUcGGACGCcgcccgcgcgcgaGCGCUcUGu -3'
miRNA:   3'- gcCGGCCCGGUA-CUUGCG-------------CGUGAaAC- -5'
5149 3' -56.9 NC_001798.1 + 58985 0.66 0.87962
Target:  5'- gCGGCCGGGC---GAACGCgggggggGCGCg--- -3'
miRNA:   3'- -GCCGGCCCGguaCUUGCG-------CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 56248 0.66 0.876066
Target:  5'- gCGGCCGGGCCcgGccccggaguuaccgcAGCcgacgauaGCGCACc--- -3'
miRNA:   3'- -GCCGGCCCGGuaC---------------UUG--------CGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 115278 0.67 0.834392
Target:  5'- gGGCUGuucaacccGGCCAUGGAgcgcuucgcCGCGCACg--- -3'
miRNA:   3'- gCCGGC--------CCGGUACUU---------GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 26005 0.67 0.82606
Target:  5'- cCGGCCgcguguucGGGCCGggGGucuuCGCGCGCg--- -3'
miRNA:   3'- -GCCGG--------CCCGGUa-CUu---GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 58706 0.67 0.82606
Target:  5'- gCGGCgCGGGggucgauccaCCAguAGCGCGCACUg-- -3'
miRNA:   3'- -GCCG-GCCC----------GGUacUUGCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 4351 0.67 0.82606
Target:  5'- gCGGCCGaGcGCCGgcgGGGgGCGCGCc--- -3'
miRNA:   3'- -GCCGGC-C-CGGUa--CUUgCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 135310 0.67 0.817554
Target:  5'- gGGcCCGGGCCGUGcuggaGCGC-CUg-- -3'
miRNA:   3'- gCC-GGCCCGGUACuug--CGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 116184 0.67 0.808881
Target:  5'- -uGCCGGGCCcgGAGCuggGCGgGCa--- -3'
miRNA:   3'- gcCGGCCCGGuaCUUG---CGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 52424 0.67 0.834392
Target:  5'- uGGgCGcGGCCGUGuACGCGCuGCa--- -3'
miRNA:   3'- gCCgGC-CCGGUACuUGCGCG-UGaaac -5'
5149 3' -56.9 NC_001798.1 + 74108 0.67 0.834392
Target:  5'- aCGGCgGGGCUGcUGGAgacgcaaugcccCGCGCACa--- -3'
miRNA:   3'- -GCCGgCCCGGU-ACUU------------GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 89424 0.67 0.834392
Target:  5'- aCGGCCGGGCgCuUGGGCGC-CucCUUg- -3'
miRNA:   3'- -GCCGGCCCG-GuACUUGCGcGu-GAAac -5'
5149 3' -56.9 NC_001798.1 + 98791 0.67 0.834392
Target:  5'- cCGGCCacGCCAgcuGCGCGCGCa--- -3'
miRNA:   3'- -GCCGGccCGGUacuUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 118922 0.67 0.834392
Target:  5'- gGGCCaGGCgAcGGACGUGCGCc--- -3'
miRNA:   3'- gCCGGcCCGgUaCUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 79141 0.67 0.842542
Target:  5'- aGGCCGuGGaggagcUGGGCGCGCGCg--- -3'
miRNA:   3'- gCCGGC-CCggu---ACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 2289 0.67 0.842542
Target:  5'- gCGGCCagcgaGGCCA---GCGCGCGCg--- -3'
miRNA:   3'- -GCCGGc----CCGGUacuUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 26289 0.67 0.842542
Target:  5'- gCGcGCUGGgGCC-UGGGCGCGcCGCUg-- -3'
miRNA:   3'- -GC-CGGCC-CGGuACUUGCGC-GUGAaac -5'
5149 3' -56.9 NC_001798.1 + 69162 0.67 0.808881
Target:  5'- cCGGCCGGGCgGagcccGAugGCGgGCcaggUGg -3'
miRNA:   3'- -GCCGGCCCGgUa----CUugCGCgUGaa--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.