miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 31763 0.71 0.599572
Target:  5'- gGGCCGGGCaggcgcgaccGACGCGCGCg--- -3'
miRNA:   3'- gCCGGCCCGguac------UUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 50099 0.71 0.603631
Target:  5'- aGGCCGGGCUGguGGCGcCGCGCa--- -3'
miRNA:   3'- gCCGGCCCGGUacUUGC-GCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 114436 0.71 0.603631
Target:  5'- -cGCCGGGCCcUGAACGcCGC-CUUc- -3'
miRNA:   3'- gcCGGCCCGGuACUUGC-GCGuGAAac -5'
5149 3' -56.9 NC_001798.1 + 5928 0.71 0.623968
Target:  5'- gGGgCGGGCCGUuccuCGCGCACa--- -3'
miRNA:   3'- gCCgGCCCGGUAcuu-GCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 137491 0.71 0.623968
Target:  5'- gGGCCGGGgCA-GAGcCGCGUGCUg-- -3'
miRNA:   3'- gCCGGCCCgGUaCUU-GCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 15052 0.71 0.623968
Target:  5'- gCGGauGGGCCcgGGGCGCGCGg---- -3'
miRNA:   3'- -GCCggCCCGGuaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 102095 0.71 0.634149
Target:  5'- aCGGCCcguagGGGgCGUGGguACGCGCGCg--- -3'
miRNA:   3'- -GCCGG-----CCCgGUACU--UGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 105193 0.7 0.644329
Target:  5'- gCGGCgGGGCCcgcgGUGGGCGacgGCGCUg-- -3'
miRNA:   3'- -GCCGgCCCGG----UACUUGCg--CGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 148092 0.7 0.654499
Target:  5'- gGGCCgGGGCCGcuaggGAaagguaggcACGCGCGCggUGu -3'
miRNA:   3'- gCCGG-CCCGGUa----CU---------UGCGCGUGaaAC- -5'
5149 3' -56.9 NC_001798.1 + 84749 0.7 0.674778
Target:  5'- gCGGCgGGGCCGU---CGgGCGCUUUu -3'
miRNA:   3'- -GCCGgCCCGGUAcuuGCgCGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 104677 0.7 0.674778
Target:  5'- gCGGCCGccGGCCGccgcGAAC-UGCGCUUUGg -3'
miRNA:   3'- -GCCGGC--CCGGUa---CUUGcGCGUGAAAC- -5'
5149 3' -56.9 NC_001798.1 + 153450 0.7 0.683863
Target:  5'- gCGGCCGucucccaGGCCAccaGAugGCGCACc--- -3'
miRNA:   3'- -GCCGGC-------CCGGUa--CUugCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 135144 0.69 0.69492
Target:  5'- gCGGCCgucGGGCCGgucUGGACGgCGCGgUUUu -3'
miRNA:   3'- -GCCGG---CCCGGU---ACUUGC-GCGUgAAAc -5'
5149 3' -56.9 NC_001798.1 + 120409 0.69 0.704917
Target:  5'- gGGCCGaucCCGUGAGCGCGCGg---- -3'
miRNA:   3'- gCCGGCcc-GGUACUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 31335 0.69 0.704917
Target:  5'- gCGGCC-GGCgGgGGGCGCGCGCa--- -3'
miRNA:   3'- -GCCGGcCCGgUaCUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 23808 0.69 0.708899
Target:  5'- uGGCCcgGGGCCGgccccccgcccccgGGGCGCGUGCUg-- -3'
miRNA:   3'- gCCGG--CCCGGUa-------------CUUGCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 79372 0.69 0.714853
Target:  5'- gGGCCGgcGGCCAgacGGGCGCGgGCg--- -3'
miRNA:   3'- gCCGGC--CCGGUa--CUUGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 77567 0.69 0.714853
Target:  5'- aCGGCCGGGgaCCAUucccccagcGGGCGCGCcCUg-- -3'
miRNA:   3'- -GCCGGCCC--GGUA---------CUUGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 101741 0.69 0.714853
Target:  5'- gCGGcCCGGGCCGUGuccACGUucacgugggccGCGCUg-- -3'
miRNA:   3'- -GCC-GGCCCGGUACu--UGCG-----------CGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 140012 0.69 0.723736
Target:  5'- gGGCUGGGCCAgGGugcccucACGCGC-CUg-- -3'
miRNA:   3'- gCCGGCCCGGUaCU-------UGCGCGuGAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.