miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 121144 1.08 0.002921
Target:  5'- cCGGCCGGGCCAUGAACGCGCACUUUGc -3'
miRNA:   3'- -GCCGGCCCGGUACUUGCGCGUGAAAC- -5'
5149 3' -56.9 NC_001798.1 + 31665 0.76 0.358017
Target:  5'- gCGGCCGGGCCcgcgccgcccgccguGccggUGGACGCGCACc--- -3'
miRNA:   3'- -GCCGGCCCGG---------------U----ACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 26197 0.76 0.362764
Target:  5'- aCGGCCGGGCCGccgccucGGGCGCGgGCg--- -3'
miRNA:   3'- -GCCGGCCCGGUa------CUUGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 34054 0.75 0.387146
Target:  5'- aCGGCUGuGGCCggGcACGCGC-CUUUGg -3'
miRNA:   3'- -GCCGGC-CCGGuaCuUGCGCGuGAAAC- -5'
5149 3' -56.9 NC_001798.1 + 36551 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36509 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36593 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36530 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36572 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36614 0.75 0.403989
Target:  5'- gCGGCCGGGCgG-GGGCGCGCGg---- -3'
miRNA:   3'- -GCCGGCCCGgUaCUUGCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 36635 0.74 0.457183
Target:  5'- gCGGCCGGGC---GGGgGCGCGCUUUc -3'
miRNA:   3'- -GCCGGCCCGguaCUUgCGCGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 151617 0.73 0.466411
Target:  5'- gGGCCGGGCCggGGGCGUGgcCGCg--- -3'
miRNA:   3'- gCCGGCCCGGuaCUUGCGC--GUGaaac -5'
5149 3' -56.9 NC_001798.1 + 24206 0.73 0.474798
Target:  5'- gCGGCCGccguGGCCAUGAGCcgccgcuacgaccGCGCGCa--- -3'
miRNA:   3'- -GCCGGC----CCGGUACUUG-------------CGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 100184 0.73 0.48515
Target:  5'- uCGGCCGGcggGUGAGCGCGCGCa--- -3'
miRNA:   3'- -GCCGGCCcggUACUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 72904 0.73 0.494654
Target:  5'- uGGaaGGGCCugcagacgGAGCGCGCGCUggucgUGg -3'
miRNA:   3'- gCCggCCCGGua------CUUGCGCGUGAa----AC- -5'
5149 3' -56.9 NC_001798.1 + 95014 0.72 0.533462
Target:  5'- gCGGCgCGGGCC-UGGAggccggggccCGCGCGCUg-- -3'
miRNA:   3'- -GCCG-GCCCGGuACUU----------GCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 135731 0.72 0.553274
Target:  5'- gCGGCCGaGGUUAUGcGCGaCGCGCUg-- -3'
miRNA:   3'- -GCCGGC-CCGGUACuUGC-GCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 1834 0.72 0.553274
Target:  5'- uCGG-CGGGCCAguccgcGGCGCGCACggcgUUGa -3'
miRNA:   3'- -GCCgGCCCGGUac----UUGCGCGUGa---AAC- -5'
5149 3' -56.9 NC_001798.1 + 42345 0.72 0.5733
Target:  5'- aGGCUGuGGCCGUGGGCGUaCACg--- -3'
miRNA:   3'- gCCGGC-CCGGUACUUGCGcGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 146495 0.71 0.59349
Target:  5'- gGGCCGGGCCGgcAACGCcccGCGCc--- -3'
miRNA:   3'- gCCGGCCCGGUacUUGCG---CGUGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.