Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5149 | 3' | -56.9 | NC_001798.1 | + | 130092 | 0.66 | 0.858267 |
Target: 5'- gGGCaCaGGCCcgGGGCGuUGCACUcgGg -3' miRNA: 3'- gCCG-GcCCGGuaCUUGC-GCGUGAaaC- -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 74154 | 0.66 | 0.858267 |
Target: 5'- cCGGCCccuGGGCCAUGcGGC-CGCugUc-- -3' miRNA: 3'- -GCCGG---CCCGGUAC-UUGcGCGugAaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 151160 | 0.66 | 0.850502 |
Target: 5'- cCGuGCCGGGCCAcgggggggUGGGCGacaggGCGCg--- -3' miRNA: 3'- -GC-CGGCCCGGU--------ACUUGCg----CGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 23751 | 0.66 | 0.850502 |
Target: 5'- gCGGCCuccGGcGCCuucuACGCGCGCUa-- -3' miRNA: 3'- -GCCGG---CC-CGGuacuUGCGCGUGAaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 20511 | 0.66 | 0.850502 |
Target: 5'- uGGCCgGGGCCuggGGuuGCGcCGCGCg--- -3' miRNA: 3'- gCCGG-CCCGGua-CU--UGC-GCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 79141 | 0.67 | 0.842542 |
Target: 5'- aGGCCGuGGaggagcUGGGCGCGCGCg--- -3' miRNA: 3'- gCCGGC-CCggu---ACUUGCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 2289 | 0.67 | 0.842542 |
Target: 5'- gCGGCCagcgaGGCCA---GCGCGCGCg--- -3' miRNA: 3'- -GCCGGc----CCGGUacuUGCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 26289 | 0.67 | 0.842542 |
Target: 5'- gCGcGCUGGgGCC-UGGGCGCGcCGCUg-- -3' miRNA: 3'- -GC-CGGCC-CGGuACUUGCGC-GUGAaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 121067 | 0.67 | 0.842542 |
Target: 5'- uGcGCCcgcGGGCCccgaGGACGCGCACa--- -3' miRNA: 3'- gC-CGG---CCCGGua--CUUGCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 115278 | 0.67 | 0.834392 |
Target: 5'- gGGCUGuucaacccGGCCAUGGAgcgcuucgcCGCGCACg--- -3' miRNA: 3'- gCCGGC--------CCGGUACUU---------GCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 52424 | 0.67 | 0.834392 |
Target: 5'- uGGgCGcGGCCGUGuACGCGCuGCa--- -3' miRNA: 3'- gCCgGC-CCGGUACuUGCGCG-UGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 74108 | 0.67 | 0.834392 |
Target: 5'- aCGGCgGGGCUGcUGGAgacgcaaugcccCGCGCACa--- -3' miRNA: 3'- -GCCGgCCCGGU-ACUU------------GCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 89424 | 0.67 | 0.834392 |
Target: 5'- aCGGCCGGGCgCuUGGGCGC-CucCUUg- -3' miRNA: 3'- -GCCGGCCCG-GuACUUGCGcGu-GAAac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 98791 | 0.67 | 0.834392 |
Target: 5'- cCGGCCacGCCAgcuGCGCGCGCa--- -3' miRNA: 3'- -GCCGGccCGGUacuUGCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 118922 | 0.67 | 0.834392 |
Target: 5'- gGGCCaGGCgAcGGACGUGCGCc--- -3' miRNA: 3'- gCCGGcCCGgUaCUUGCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 26005 | 0.67 | 0.82606 |
Target: 5'- cCGGCCgcguguucGGGCCGggGGucuuCGCGCGCg--- -3' miRNA: 3'- -GCCGG--------CCCGGUa-CUu---GCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 58706 | 0.67 | 0.82606 |
Target: 5'- gCGGCgCGGGggucgauccaCCAguAGCGCGCACUg-- -3' miRNA: 3'- -GCCG-GCCC----------GGUacUUGCGCGUGAaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 4351 | 0.67 | 0.82606 |
Target: 5'- gCGGCCGaGcGCCGgcgGGGgGCGCGCc--- -3' miRNA: 3'- -GCCGGC-C-CGGUa--CUUgCGCGUGaaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 135310 | 0.67 | 0.817554 |
Target: 5'- gGGcCCGGGCCGUGcuggaGCGC-CUg-- -3' miRNA: 3'- gCC-GGCCCGGUACuug--CGCGuGAaac -5' |
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5149 | 3' | -56.9 | NC_001798.1 | + | 69162 | 0.67 | 0.808881 |
Target: 5'- cCGGCCGGGCgGagcccGAugGCGgGCcaggUGg -3' miRNA: 3'- -GCCGGCCCGgUa----CUugCGCgUGaa--AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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