miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 64725 0.67 0.808881
Target:  5'- gGGCCGaGGCggcggugggCAUGAGCGCGaugaACUg-- -3'
miRNA:   3'- gCCGGC-CCG---------GUACUUGCGCg---UGAaac -5'
5149 3' -56.9 NC_001798.1 + 69162 0.67 0.808881
Target:  5'- cCGGCCGGGCgGagcccGAugGCGgGCcaggUGg -3'
miRNA:   3'- -GCCGGCCCGgUa----CUugCGCgUGaa--AC- -5'
5149 3' -56.9 NC_001798.1 + 116184 0.67 0.808881
Target:  5'- -uGCCGGGCCcgGAGCuggGCGgGCa--- -3'
miRNA:   3'- gcCGGCCCGGuaCUUG---CGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 64858 0.68 0.800049
Target:  5'- gCGGCC-GGCCcgGAcAUGCuGCGCUUa- -3'
miRNA:   3'- -GCCGGcCCGGuaCU-UGCG-CGUGAAac -5'
5149 3' -56.9 NC_001798.1 + 55492 0.68 0.800049
Target:  5'- aGGCgagaagCGGGaCCGUcGGACGCGCGCc--- -3'
miRNA:   3'- gCCG------GCCC-GGUA-CUUGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 2992 0.68 0.800049
Target:  5'- cCGGCCcgcGGGCCccGGGCGCggggGCGCg--- -3'
miRNA:   3'- -GCCGG---CCCGGuaCUUGCG----CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 2817 0.68 0.79737
Target:  5'- gGGCCcaGGGCCccGGcgaccaggcucacgGCGCGCACg--- -3'
miRNA:   3'- gCCGG--CCCGGuaCU--------------UGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 149657 0.68 0.791067
Target:  5'- aGGCCGGGCgCcgGGuCGCGgGCc--- -3'
miRNA:   3'- gCCGGCCCG-GuaCUuGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 39155 0.68 0.791067
Target:  5'- aGGCuCGGGCCGUGAGCGaC-CAg---- -3'
miRNA:   3'- gCCG-GCCCGGUACUUGC-GcGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 146308 0.68 0.781943
Target:  5'- gCGGCCGGGCgGgagGAugGCGgAg---- -3'
miRNA:   3'- -GCCGGCCCGgUa--CUugCGCgUgaaac -5'
5149 3' -56.9 NC_001798.1 + 63714 0.68 0.781943
Target:  5'- uGGCCGGGUgGUuGAugGUGCGg---- -3'
miRNA:   3'- gCCGGCCCGgUA-CUugCGCGUgaaac -5'
5149 3' -56.9 NC_001798.1 + 6674 0.68 0.781943
Target:  5'- aGGCCGGGCgccgccuuCGUGGACGgGaCACc--- -3'
miRNA:   3'- gCCGGCCCG--------GUACUUGCgC-GUGaaac -5'
5149 3' -56.9 NC_001798.1 + 89151 0.68 0.772686
Target:  5'- aCGGCCucGGGCCGcaggGAGaGCGUACUg-- -3'
miRNA:   3'- -GCCGG--CCCGGUa---CUUgCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 66774 0.68 0.769884
Target:  5'- gCGGCgUGGGCCGcgGAaucggagucggccgACGCGCGCg--- -3'
miRNA:   3'- -GCCG-GCCCGGUa-CU--------------UGCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 88675 0.68 0.763305
Target:  5'- aGGcCCGcGGCCGUGAGgcCGCgGCACa--- -3'
miRNA:   3'- gCC-GGC-CCGGUACUU--GCG-CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 135254 0.68 0.763305
Target:  5'- gCGGgCGGGCCuggaaaggcUGGACGCGCugg-UGg -3'
miRNA:   3'- -GCCgGCCCGGu--------ACUUGCGCGugaaAC- -5'
5149 3' -56.9 NC_001798.1 + 143761 0.68 0.763305
Target:  5'- gGGUCGGGCC-UGAuCGCGUuCUg-- -3'
miRNA:   3'- gCCGGCCCGGuACUuGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 154062 0.68 0.753809
Target:  5'- aCGGCUGGaGCgCcgGGGCGCgGCACg--- -3'
miRNA:   3'- -GCCGGCC-CG-GuaCUUGCG-CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 11982 0.68 0.753809
Target:  5'- aGGCgGGGCUGUGGGCGUGgUGCg--- -3'
miRNA:   3'- gCCGgCCCGGUACUUGCGC-GUGaaac -5'
5149 3' -56.9 NC_001798.1 + 140103 0.69 0.744207
Target:  5'- aGGCCGGGCUccugGGGCG-GCACc--- -3'
miRNA:   3'- gCCGGCCCGGua--CUUGCgCGUGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.