miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5149 3' -56.9 NC_001798.1 + 154062 0.68 0.753809
Target:  5'- aCGGCUGGaGCgCcgGGGCGCgGCACg--- -3'
miRNA:   3'- -GCCGGCC-CG-GuaCUUGCG-CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 153450 0.7 0.683863
Target:  5'- gCGGCCGucucccaGGCCAccaGAugGCGCACc--- -3'
miRNA:   3'- -GCCGGC-------CCGGUa--CUugCGCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 151617 0.73 0.466411
Target:  5'- gGGCCGGGCCggGGGCGUGgcCGCg--- -3'
miRNA:   3'- gCCGGCCCGGuaCUUGCGC--GUGaaac -5'
5149 3' -56.9 NC_001798.1 + 151160 0.66 0.850502
Target:  5'- cCGuGCCGGGCCAcgggggggUGGGCGacaggGCGCg--- -3'
miRNA:   3'- -GC-CGGCCCGGU--------ACUUGCg----CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 150380 0.66 0.873184
Target:  5'- gCGGCgCGGGCCcgGccGCGUccGCGCUc-- -3'
miRNA:   3'- -GCCG-GCCCGGuaCu-UGCG--CGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 149657 0.68 0.791067
Target:  5'- aGGCCGGGCgCcgGGuCGCGgGCc--- -3'
miRNA:   3'- gCCGGCCCG-GuaCUuGCGCgUGaaac -5'
5149 3' -56.9 NC_001798.1 + 148092 0.7 0.654499
Target:  5'- gGGCCgGGGCCGcuaggGAaagguaggcACGCGCGCggUGu -3'
miRNA:   3'- gCCGG-CCCGGUa----CU---------UGCGCGUGaaAC- -5'
5149 3' -56.9 NC_001798.1 + 146495 0.71 0.59349
Target:  5'- gGGCCGGGCCGgcAACGCcccGCGCc--- -3'
miRNA:   3'- gCCGGCCCGGUacUUGCG---CGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 146308 0.68 0.781943
Target:  5'- gCGGCCGGGCgGgagGAugGCGgAg---- -3'
miRNA:   3'- -GCCGGCCCGgUa--CUugCGCgUgaaac -5'
5149 3' -56.9 NC_001798.1 + 143761 0.68 0.763305
Target:  5'- gGGUCGGGCC-UGAuCGCGUuCUg-- -3'
miRNA:   3'- gCCGGCCCGGuACUuGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 140103 0.69 0.744207
Target:  5'- aGGCCGGGCUccugGGGCG-GCACc--- -3'
miRNA:   3'- gCCGGCCCGGua--CUUGCgCGUGaaac -5'
5149 3' -56.9 NC_001798.1 + 140012 0.69 0.723736
Target:  5'- gGGCUGGGCCAgGGugcccucACGCGC-CUg-- -3'
miRNA:   3'- gCCGGCCCGGUaCU-------UGCGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 137491 0.71 0.623968
Target:  5'- gGGCCGGGgCA-GAGcCGCGUGCUg-- -3'
miRNA:   3'- gCCGGCCCgGUaCUU-GCGCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 135731 0.72 0.553274
Target:  5'- gCGGCCGaGGUUAUGcGCGaCGCGCUg-- -3'
miRNA:   3'- -GCCGGC-CCGGUACuUGC-GCGUGAaac -5'
5149 3' -56.9 NC_001798.1 + 135534 0.66 0.880324
Target:  5'- -cGCCGGGCCcucgaggcguccGUGcGCGCcGUACUUUc -3'
miRNA:   3'- gcCGGCCCGG------------UACuUGCG-CGUGAAAc -5'
5149 3' -56.9 NC_001798.1 + 135310 0.67 0.817554
Target:  5'- gGGcCCGGGCCGUGcuggaGCGC-CUg-- -3'
miRNA:   3'- gCC-GGCCCGGUACuug--CGCGuGAaac -5'
5149 3' -56.9 NC_001798.1 + 135254 0.68 0.763305
Target:  5'- gCGGgCGGGCCuggaaaggcUGGACGCGCugg-UGg -3'
miRNA:   3'- -GCCgGCCCGGu--------ACUUGCGCGugaaAC- -5'
5149 3' -56.9 NC_001798.1 + 135144 0.69 0.69492
Target:  5'- gCGGCCgucGGGCCGgucUGGACGgCGCGgUUUu -3'
miRNA:   3'- -GCCGG---CCCGGU---ACUUGC-GCGUgAAAc -5'
5149 3' -56.9 NC_001798.1 + 132543 0.66 0.887246
Target:  5'- uGGaCGGGUCcgGGGCGCGCuCg--- -3'
miRNA:   3'- gCCgGCCCGGuaCUUGCGCGuGaaac -5'
5149 3' -56.9 NC_001798.1 + 131025 0.69 0.72472
Target:  5'- aGGCgaCGGGCCGcauccAGCGCGCGCUc-- -3'
miRNA:   3'- gCCG--GCCCGGUac---UUGCGCGUGAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.