Results 41 - 60 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5150 | 3' | -51.9 | NC_001798.1 | + | 31358 | 0.67 | 0.965726 |
Target: 5'- -gGCGCGGCGgGUGGGCGaagacgcCGCGgcgGCGg -3' miRNA: 3'- ugUGUGUCGCaUAUUCGC-------GUGCa--CGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 88814 | 0.68 | 0.962644 |
Target: 5'- -aGCGC-GCGUcacGUAcGCGCGCGUcGCGa -3' miRNA: 3'- ugUGUGuCGCA---UAUuCGCGUGCA-CGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 47132 | 0.68 | 0.962644 |
Target: 5'- -gGCAUgaccucgaugGGCGUAUGuaugaucGCGCACGUGUa -3' miRNA: 3'- ugUGUG----------UCGCAUAUu------CGCGUGCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 145791 | 0.68 | 0.962644 |
Target: 5'- cCACACAG-----GAGCGCGCGgGCGg -3' miRNA: 3'- uGUGUGUCgcauaUUCGCGUGCaCGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 1370 | 0.68 | 0.958999 |
Target: 5'- cGCGCACGGCGUcgcgccccAGCGcCACGUagacgggccgcaGCGg -3' miRNA: 3'- -UGUGUGUCGCAuau-----UCGC-GUGCA------------CGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 74041 | 0.68 | 0.958999 |
Target: 5'- gGCGCGCGGCGgccu-GCGuUGCGUGUu -3' miRNA: 3'- -UGUGUGUCGCauauuCGC-GUGCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 150450 | 0.68 | 0.958622 |
Target: 5'- gACGCGCGgggcgacggccgcGCGg--GGGCGCGCG-GCGc -3' miRNA: 3'- -UGUGUGU-------------CGCauaUUCGCGUGCaCGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 70312 | 0.68 | 0.955516 |
Target: 5'- -gGCGCGGCGgucggcccggcggAGGCGCggGCGUGCu -3' miRNA: 3'- ugUGUGUCGCaua----------UUCGCG--UGCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 134065 | 0.68 | 0.955117 |
Target: 5'- cGCgACGCcGCGggggAGGCGCGCGcGCGc -3' miRNA: 3'- -UG-UGUGuCGCaua-UUCGCGUGCaCGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 69014 | 0.68 | 0.950992 |
Target: 5'- cGCGCGCAuCGUAggcggcGGCGCACGcgGCc -3' miRNA: 3'- -UGUGUGUcGCAUau----UCGCGUGCa-CGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 148439 | 0.68 | 0.950992 |
Target: 5'- -gGCACgGGCGUA--AGUGCGgGUGCa -3' miRNA: 3'- ugUGUG-UCGCAUauUCGCGUgCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 104081 | 0.68 | 0.950992 |
Target: 5'- -aGCGCGGUG---AGGCGCACGaGCGc -3' miRNA: 3'- ugUGUGUCGCauaUUCGCGUGCaCGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 65674 | 0.68 | 0.950992 |
Target: 5'- uACACGCAcGCcccgGUGGG-GCGCGUGCu -3' miRNA: 3'- -UGUGUGU-CGca--UAUUCgCGUGCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 92321 | 0.68 | 0.946622 |
Target: 5'- gGCGCGCAGCGgcgacGCGgACGUcGCc -3' miRNA: 3'- -UGUGUGUCGCauauuCGCgUGCA-CGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 96023 | 0.68 | 0.946622 |
Target: 5'- gGCACAcCGGCGgggcGGGCGgGCGgGCGa -3' miRNA: 3'- -UGUGU-GUCGCaua-UUCGCgUGCaCGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 98553 | 0.68 | 0.946622 |
Target: 5'- uGCGCGCuGGuCGUGgGGGCGCugGUGg- -3' miRNA: 3'- -UGUGUG-UC-GCAUaUUCGCGugCACgc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 52516 | 0.69 | 0.932007 |
Target: 5'- -gACGCGGCGgccgcGCGCGcCGUGCu -3' miRNA: 3'- ugUGUGUCGCauauuCGCGU-GCACGc -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 4358 | 0.69 | 0.920992 |
Target: 5'- aGCGC-CGGCGgg-GGGCGCGcCGgcgGCGg -3' miRNA: 3'- -UGUGuGUCGCauaUUCGCGU-GCa--CGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 153485 | 0.69 | 0.915103 |
Target: 5'- cACGCGCGGCGag-AAGCaCACcUGCGg -3' miRNA: 3'- -UGUGUGUCGCauaUUCGcGUGcACGC- -5' |
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5150 | 3' | -51.9 | NC_001798.1 | + | 34496 | 0.69 | 0.915103 |
Target: 5'- aACGCGCGGCGUucgagGGGCGCGCu---- -3' miRNA: 3'- -UGUGUGUCGCAua---UUCGCGUGcacgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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