miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 3479 0.66 0.979874
Target:  5'- uGCGCGCGGuCGUAgcGGCGgcucauggcCACG-GCGg -3'
miRNA:   3'- -UGUGUGUC-GCAUauUCGC---------GUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 40430 0.66 0.979874
Target:  5'- gUACAC-GCGUA--GGCGgGgGUGCGg -3'
miRNA:   3'- uGUGUGuCGCAUauUCGCgUgCACGC- -5'
5150 3' -51.9 NC_001798.1 + 19783 0.66 0.979874
Target:  5'- gGCAgGCGGCGgggAAGCGCAUuuuucgGCa -3'
miRNA:   3'- -UGUgUGUCGCauaUUCGCGUGca----CGc -5'
5150 3' -51.9 NC_001798.1 + 79668 0.66 0.979874
Target:  5'- gGCGCGCugcugauGCGUcccgAGGCGgCcuGCGUGCGg -3'
miRNA:   3'- -UGUGUGu------CGCAua--UUCGC-G--UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 154407 0.67 0.97752
Target:  5'- gGCGgGCGGCGgc--GGCGgGCGgGCGg -3'
miRNA:   3'- -UGUgUGUCGCauauUCGCgUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 69 0.67 0.97752
Target:  5'- gGCGgGCGGCGgc--GGCGgGCGgGCGg -3'
miRNA:   3'- -UGUgUGUCGCauauUCGCgUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 4196 0.67 0.97752
Target:  5'- cGCcCGCGGCGUGgucugcGGCGCugGcggggGCGc -3'
miRNA:   3'- -UGuGUGUCGCAUau----UCGCGugCa----CGC- -5'
5150 3' -51.9 NC_001798.1 + 42195 0.67 0.974969
Target:  5'- -gGCGgGGCGUGaaaguggAAGCGCcgcgggucgGCGUGCGc -3'
miRNA:   3'- ugUGUgUCGCAUa------UUCGCG---------UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 42754 0.67 0.974969
Target:  5'- cCGCACAGaCGggc-GGCGCGCGggGCc -3'
miRNA:   3'- uGUGUGUC-GCauauUCGCGUGCa-CGc -5'
5150 3' -51.9 NC_001798.1 + 2284 0.67 0.974969
Target:  5'- aGCGCGCGGCcagcgAGGCcaGCGCGcGCGg -3'
miRNA:   3'- -UGUGUGUCGcaua-UUCG--CGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 26032 0.67 0.974969
Target:  5'- uCGCGC-GCGUGgaggccGCGCACGcGCGc -3'
miRNA:   3'- uGUGUGuCGCAUauu---CGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 44197 0.67 0.972213
Target:  5'- uGCACgaACAGCGUGgugAGGC-CGCGcUGCc -3'
miRNA:   3'- -UGUG--UGUCGCAUa--UUCGcGUGC-ACGc -5'
5150 3' -51.9 NC_001798.1 + 142392 0.67 0.972213
Target:  5'- uCGCACGGCGa--AAGCGUccggaGUGCGa -3'
miRNA:   3'- uGUGUGUCGCauaUUCGCGug---CACGC- -5'
5150 3' -51.9 NC_001798.1 + 146700 0.67 0.971926
Target:  5'- gGCGCGCAGCugagugcucugcgGUugcGGGCGC-CGUGCc -3'
miRNA:   3'- -UGUGUGUCG-------------CAua-UUCGCGuGCACGc -5'
5150 3' -51.9 NC_001798.1 + 128435 0.67 0.971926
Target:  5'- cCACGCuGCGgugGGGCGCGCaggguccGUGCu -3'
miRNA:   3'- uGUGUGuCGCauaUUCGCGUG-------CACGc -5'
5150 3' -51.9 NC_001798.1 + 26377 0.67 0.971637
Target:  5'- gGC-CGCGGCGggaguucuGCGCGCGgGCGc -3'
miRNA:   3'- -UGuGUGUCGCauauu---CGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 133750 0.67 0.969245
Target:  5'- uGCGCGCGcccGCGUGgGGGCGCuGCuUGCGc -3'
miRNA:   3'- -UGUGUGU---CGCAUaUUCGCG-UGcACGC- -5'
5150 3' -51.9 NC_001798.1 + 31558 0.67 0.969245
Target:  5'- uGC-CACAGuCGUcgGGGCGCGcCGcGCGc -3'
miRNA:   3'- -UGuGUGUC-GCAuaUUCGCGU-GCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 93274 0.67 0.966058
Target:  5'- cCGCGCcggcgccgucggGGCGUAccuGGCGCGCGccGCGg -3'
miRNA:   3'- uGUGUG------------UCGCAUau-UCGCGUGCa-CGC- -5'
5150 3' -51.9 NC_001798.1 + 47044 0.67 0.966058
Target:  5'- cGCACGCGGCGUuaucgGGGaCGCGCaaUGCc -3'
miRNA:   3'- -UGUGUGUCGCAua---UUC-GCGUGc-ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.