miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 77219 0.7 0.895923
Target:  5'- -gACGCGGcCGUGcGGGCGCAUG-GCGc -3'
miRNA:   3'- ugUGUGUC-GCAUaUUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 71106 0.7 0.895923
Target:  5'- uGCGCGCccccggGGaCGcUGauGGCGCGCGUGCGg -3'
miRNA:   3'- -UGUGUG------UC-GC-AUauUCGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 149427 0.7 0.895923
Target:  5'- uCACGCAGUu-----GCGCGCGUGCu -3'
miRNA:   3'- uGUGUGUCGcauauuCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 2215 0.7 0.902566
Target:  5'- -gGCGCAGCGggcccgAGGCGCGCa-GCGg -3'
miRNA:   3'- ugUGUGUCGCaua---UUCGCGUGcaCGC- -5'
5150 3' -51.9 NC_001798.1 + 1708 0.7 0.902566
Target:  5'- aACACGCGGCcgg-AGGCcaGCACgGUGCGg -3'
miRNA:   3'- -UGUGUGUCGcauaUUCG--CGUG-CACGC- -5'
5150 3' -51.9 NC_001798.1 + 86150 0.7 0.90896
Target:  5'- aGCGCACcGCGg---GGCGCGCaUGCGc -3'
miRNA:   3'- -UGUGUGuCGCauauUCGCGUGcACGC- -5'
5150 3' -51.9 NC_001798.1 + 153485 0.69 0.915103
Target:  5'- cACGCGCGGCGag-AAGCaCACcUGCGg -3'
miRNA:   3'- -UGUGUGUCGCauaUUCGcGUGcACGC- -5'
5150 3' -51.9 NC_001798.1 + 34496 0.69 0.915103
Target:  5'- aACGCGCGGCGUucgagGGGCGCGCu---- -3'
miRNA:   3'- -UGUGUGUCGCAua---UUCGCGUGcacgc -5'
5150 3' -51.9 NC_001798.1 + 4358 0.69 0.920992
Target:  5'- aGCGC-CGGCGgg-GGGCGCGcCGgcgGCGg -3'
miRNA:   3'- -UGUGuGUCGCauaUUCGCGU-GCa--CGC- -5'
5150 3' -51.9 NC_001798.1 + 52516 0.69 0.932007
Target:  5'- -gACGCGGCGgccgcGCGCGcCGUGCu -3'
miRNA:   3'- ugUGUGUCGCauauuCGCGU-GCACGc -5'
5150 3' -51.9 NC_001798.1 + 98553 0.68 0.946622
Target:  5'- uGCGCGCuGGuCGUGgGGGCGCugGUGg- -3'
miRNA:   3'- -UGUGUG-UC-GCAUaUUCGCGugCACgc -5'
5150 3' -51.9 NC_001798.1 + 92321 0.68 0.946622
Target:  5'- gGCGCGCAGCGgcgacGCGgACGUcGCc -3'
miRNA:   3'- -UGUGUGUCGCauauuCGCgUGCA-CGc -5'
5150 3' -51.9 NC_001798.1 + 96023 0.68 0.946622
Target:  5'- gGCACAcCGGCGgggcGGGCGgGCGgGCGa -3'
miRNA:   3'- -UGUGU-GUCGCaua-UUCGCgUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 69014 0.68 0.950992
Target:  5'- cGCGCGCAuCGUAggcggcGGCGCACGcgGCc -3'
miRNA:   3'- -UGUGUGUcGCAUau----UCGCGUGCa-CGc -5'
5150 3' -51.9 NC_001798.1 + 148439 0.68 0.950992
Target:  5'- -gGCACgGGCGUA--AGUGCGgGUGCa -3'
miRNA:   3'- ugUGUG-UCGCAUauUCGCGUgCACGc -5'
5150 3' -51.9 NC_001798.1 + 104081 0.68 0.950992
Target:  5'- -aGCGCGGUG---AGGCGCACGaGCGc -3'
miRNA:   3'- ugUGUGUCGCauaUUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 65674 0.68 0.950992
Target:  5'- uACACGCAcGCcccgGUGGG-GCGCGUGCu -3'
miRNA:   3'- -UGUGUGU-CGca--UAUUCgCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 134065 0.68 0.955117
Target:  5'- cGCgACGCcGCGggggAGGCGCGCGcGCGc -3'
miRNA:   3'- -UG-UGUGuCGCaua-UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 70312 0.68 0.955516
Target:  5'- -gGCGCGGCGgucggcccggcggAGGCGCggGCGUGCu -3'
miRNA:   3'- ugUGUGUCGCaua----------UUCGCG--UGCACGc -5'
5150 3' -51.9 NC_001798.1 + 150450 0.68 0.958622
Target:  5'- gACGCGCGgggcgacggccgcGCGg--GGGCGCGCG-GCGc -3'
miRNA:   3'- -UGUGUGU-------------CGCauaUUCGCGUGCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.