miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 26032 0.67 0.974969
Target:  5'- uCGCGC-GCGUGgaggccGCGCACGcGCGc -3'
miRNA:   3'- uGUGUGuCGCAUauu---CGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 26377 0.67 0.971637
Target:  5'- gGC-CGCGGCGggaguucuGCGCGCGgGCGc -3'
miRNA:   3'- -UGuGUGUCGCauauu---CGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 26729 0.75 0.657655
Target:  5'- -gACGCGGCG-AUGGccGCGCGCGUGUGu -3'
miRNA:   3'- ugUGUGUCGCaUAUU--CGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 31358 0.67 0.965726
Target:  5'- -gGCGCGGCGgGUGGGCGaagacgcCGCGgcgGCGg -3'
miRNA:   3'- ugUGUGUCGCaUAUUCGC-------GUGCa--CGC- -5'
5150 3' -51.9 NC_001798.1 + 31558 0.67 0.969245
Target:  5'- uGC-CACAGuCGUcgGGGCGCGcCGcGCGc -3'
miRNA:   3'- -UGuGUGUC-GCAuaUUCGCGU-GCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 34496 0.69 0.915103
Target:  5'- aACGCGCGGCGUucgagGGGCGCGCu---- -3'
miRNA:   3'- -UGUGUGUCGCAua---UUCGCGUGcacgc -5'
5150 3' -51.9 NC_001798.1 + 36522 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 36564 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 36606 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 39458 0.66 0.98204
Target:  5'- aGCGCcauCAGCGgaggggGGGCcugGCGCGUGCc -3'
miRNA:   3'- -UGUGu--GUCGCaua---UUCG---CGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 40430 0.66 0.979874
Target:  5'- gUACAC-GCGUA--GGCGgGgGUGCGg -3'
miRNA:   3'- uGUGUGuCGCAUauUCGCgUgCACGC- -5'
5150 3' -51.9 NC_001798.1 + 40729 0.72 0.825713
Target:  5'- cCACgACGGCGaUAUAgcacaGGCGCACG-GCGa -3'
miRNA:   3'- uGUG-UGUCGC-AUAU-----UCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 42195 0.67 0.974969
Target:  5'- -gGCGgGGCGUGaaaguggAAGCGCcgcgggucgGCGUGCGc -3'
miRNA:   3'- ugUGUgUCGCAUa------UUCGCG---------UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 42754 0.67 0.974969
Target:  5'- cCGCACAGaCGggc-GGCGCGCGggGCc -3'
miRNA:   3'- uGUGUGUC-GCauauUCGCGUGCa-CGc -5'
5150 3' -51.9 NC_001798.1 + 43956 0.66 0.98204
Target:  5'- gGCACugAGgGUGUcgGGGCGUggguCGUGgGg -3'
miRNA:   3'- -UGUGugUCgCAUA--UUCGCGu---GCACgC- -5'
5150 3' -51.9 NC_001798.1 + 44197 0.67 0.972213
Target:  5'- uGCACgaACAGCGUGgugAGGC-CGCGcUGCc -3'
miRNA:   3'- -UGUG--UGUCGCAUa--UUCGcGUGC-ACGc -5'
5150 3' -51.9 NC_001798.1 + 47044 0.67 0.966058
Target:  5'- cGCACGCGGCGUuaucgGGGaCGCGCaaUGCc -3'
miRNA:   3'- -UGUGUGUCGCAua---UUC-GCGUGc-ACGc -5'
5150 3' -51.9 NC_001798.1 + 47132 0.68 0.962644
Target:  5'- -gGCAUgaccucgaugGGCGUAUGuaugaucGCGCACGUGUa -3'
miRNA:   3'- ugUGUG----------UCGCAUAUu------CGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 52516 0.69 0.932007
Target:  5'- -gACGCGGCGgccgcGCGCGcCGUGCu -3'
miRNA:   3'- ugUGUGUCGCauauuCGCGU-GCACGc -5'
5150 3' -51.9 NC_001798.1 + 65674 0.68 0.950992
Target:  5'- uACACGCAcGCcccgGUGGG-GCGCGUGCu -3'
miRNA:   3'- -UGUGUGU-CGca--UAUUCgCGUGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.