miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 69 0.67 0.97752
Target:  5'- gGCGgGCGGCGgc--GGCGgGCGgGCGg -3'
miRNA:   3'- -UGUgUGUCGCauauUCGCgUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 1370 0.68 0.958999
Target:  5'- cGCGCACGGCGUcgcgccccAGCGcCACGUagacgggccgcaGCGg -3'
miRNA:   3'- -UGUGUGUCGCAuau-----UCGC-GUGCA------------CGC- -5'
5150 3' -51.9 NC_001798.1 + 1573 0.79 0.462581
Target:  5'- gGCAC-CAGCGUGUcgGGGCcgaaGCGCGUGCGc -3'
miRNA:   3'- -UGUGuGUCGCAUA--UUCG----CGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 1648 0.82 0.302139
Target:  5'- gGCGCGuCGGgGUAcAGGCGCGCGUGCGc -3'
miRNA:   3'- -UGUGU-GUCgCAUaUUCGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 1708 0.7 0.902566
Target:  5'- aACACGCGGCcgg-AGGCcaGCACgGUGCGg -3'
miRNA:   3'- -UGUGUGUCGcauaUUCG--CGUG-CACGC- -5'
5150 3' -51.9 NC_001798.1 + 1760 0.66 0.985841
Target:  5'- aGCGCACGGCGcac---UGCACG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCauauucGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 2215 0.7 0.902566
Target:  5'- -gGCGCAGCGggcccgAGGCGCGCa-GCGg -3'
miRNA:   3'- ugUGUGUCGCaua---UUCGCGUGcaCGC- -5'
5150 3' -51.9 NC_001798.1 + 2284 0.67 0.974969
Target:  5'- aGCGCGCGGCcagcgAGGCcaGCGCGcGCGg -3'
miRNA:   3'- -UGUGUGUCGcaua-UUCG--CGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 2954 0.74 0.720184
Target:  5'- gGCGCGCAgGCGg---GGCGCgucgGCGUGCGg -3'
miRNA:   3'- -UGUGUGU-CGCauauUCGCG----UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 3479 0.66 0.979874
Target:  5'- uGCGCGCGGuCGUAgcGGCGgcucauggcCACG-GCGg -3'
miRNA:   3'- -UGUGUGUC-GCAUauUCGC---------GUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 4196 0.67 0.97752
Target:  5'- cGCcCGCGGCGUGgucugcGGCGCugGcggggGCGc -3'
miRNA:   3'- -UGuGUGUCGCAUau----UCGCGugCa----CGC- -5'
5150 3' -51.9 NC_001798.1 + 4358 0.69 0.920992
Target:  5'- aGCGC-CGGCGgg-GGGCGCGcCGgcgGCGg -3'
miRNA:   3'- -UGUGuGUCGCauaUUCGCGU-GCa--CGC- -5'
5150 3' -51.9 NC_001798.1 + 9653 0.71 0.859119
Target:  5'- -gGCGCAGCGggcc-GCGCGCGgaggGCGc -3'
miRNA:   3'- ugUGUGUCGCauauuCGCGUGCa---CGC- -5'
5150 3' -51.9 NC_001798.1 + 9831 0.66 0.985841
Target:  5'- cACGCACAG-GUAgAGGCcgGCGUGCu -3'
miRNA:   3'- -UGUGUGUCgCAUaUUCGcgUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 17138 0.66 0.98204
Target:  5'- -uGCGCGGUG---AGGCGCgauuccGCGUGCGu -3'
miRNA:   3'- ugUGUGUCGCauaUUCGCG------UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 19783 0.66 0.979874
Target:  5'- gGCAgGCGGCGgggAAGCGCAUuuuucgGCa -3'
miRNA:   3'- -UGUgUGUCGCauaUUCGCGUGca----CGc -5'
5150 3' -51.9 NC_001798.1 + 20473 0.7 0.881905
Target:  5'- -aGCAgAGCGcc--GGUGCGCGUGCGc -3'
miRNA:   3'- ugUGUgUCGCauauUCGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 22342 0.66 0.984026
Target:  5'- gACGCGCgGGCGUcgGGGCGgggcCGCGcauaaUGCGg -3'
miRNA:   3'- -UGUGUG-UCGCAuaUUCGC----GUGC-----ACGC- -5'
5150 3' -51.9 NC_001798.1 + 24551 0.71 0.866941
Target:  5'- gGCGC-CGGCGgugGUGgcggcggccGGCGCGCGgagGCGg -3'
miRNA:   3'- -UGUGuGUCGCa--UAU---------UCGCGUGCa--CGC- -5'
5150 3' -51.9 NC_001798.1 + 25043 0.66 0.987493
Target:  5'- cCGCGCcGCGgg-AGGCGCGCaaGCGc -3'
miRNA:   3'- uGUGUGuCGCauaUUCGCGUGcaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.