miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 154407 0.67 0.97752
Target:  5'- gGCGgGCGGCGgc--GGCGgGCGgGCGg -3'
miRNA:   3'- -UGUgUGUCGCauauUCGCgUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 153814 0.79 0.443617
Target:  5'- gGCAgGCGGCGgc-AGGCGCGgCGUGCGg -3'
miRNA:   3'- -UGUgUGUCGCauaUUCGCGU-GCACGC- -5'
5150 3' -51.9 NC_001798.1 + 153664 0.66 0.985841
Target:  5'- cCGCGCGGCGcGUccGCGgGCGgggacGCGg -3'
miRNA:   3'- uGUGUGUCGCaUAuuCGCgUGCa----CGC- -5'
5150 3' -51.9 NC_001798.1 + 153485 0.69 0.915103
Target:  5'- cACGCGCGGCGag-AAGCaCACcUGCGg -3'
miRNA:   3'- -UGUGUGUCGCauaUUCGcGUGcACGC- -5'
5150 3' -51.9 NC_001798.1 + 150450 0.68 0.958622
Target:  5'- gACGCGCGgggcgacggccgcGCGg--GGGCGCGCG-GCGc -3'
miRNA:   3'- -UGUGUGU-------------CGCauaUUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 149427 0.7 0.895923
Target:  5'- uCACGCAGUu-----GCGCGCGUGCu -3'
miRNA:   3'- uGUGUGUCGcauauuCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 148439 0.68 0.950992
Target:  5'- -gGCACgGGCGUA--AGUGCGgGUGCa -3'
miRNA:   3'- ugUGUG-UCGCAUauUCGCGUgCACGc -5'
5150 3' -51.9 NC_001798.1 + 146700 0.67 0.971926
Target:  5'- gGCGCGCAGCugagugcucugcgGUugcGGGCGC-CGUGCc -3'
miRNA:   3'- -UGUGUGUCG-------------CAua-UUCGCGuGCACGc -5'
5150 3' -51.9 NC_001798.1 + 145791 0.68 0.962644
Target:  5'- cCACACAG-----GAGCGCGCGgGCGg -3'
miRNA:   3'- uGUGUGUCgcauaUUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 143045 0.73 0.770165
Target:  5'- -uGCGCGGCGUu--GGCGCGCuUGCa -3'
miRNA:   3'- ugUGUGUCGCAuauUCGCGUGcACGc -5'
5150 3' -51.9 NC_001798.1 + 142392 0.67 0.972213
Target:  5'- uCGCACGGCGa--AAGCGUccggaGUGCGa -3'
miRNA:   3'- uGUGUGUCGCauaUUCGCGug---CACGC- -5'
5150 3' -51.9 NC_001798.1 + 142140 0.66 0.984026
Target:  5'- -gACGCGGCacagguGGUGCACGUGUu -3'
miRNA:   3'- ugUGUGUCGcauau-UCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 138670 0.66 0.98204
Target:  5'- uGCACGCGGuCGUAUuccGCcauGCGCGUGg- -3'
miRNA:   3'- -UGUGUGUC-GCAUAuu-CG---CGUGCACgc -5'
5150 3' -51.9 NC_001798.1 + 134669 0.7 0.881905
Target:  5'- gACACccGCAGCGggucacGGCGCGgGUGCu -3'
miRNA:   3'- -UGUG--UGUCGCauau--UCGCGUgCACGc -5'
5150 3' -51.9 NC_001798.1 + 134467 0.66 0.985841
Target:  5'- gGCGCGCGGUugGcGUGGGCGCGCcugGCc -3'
miRNA:   3'- -UGUGUGUCG--CaUAUUCGCGUGca-CGc -5'
5150 3' -51.9 NC_001798.1 + 134065 0.68 0.955117
Target:  5'- cGCgACGCcGCGggggAGGCGCGCGcGCGc -3'
miRNA:   3'- -UG-UGUGuCGCaua-UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 133750 0.67 0.969245
Target:  5'- uGCGCGCGcccGCGUGgGGGCGCuGCuUGCGc -3'
miRNA:   3'- -UGUGUGU---CGCAUaUUCGCG-UGcACGC- -5'
5150 3' -51.9 NC_001798.1 + 130965 0.66 0.987493
Target:  5'- cACGCGCAGaCGUuuccggcgAUuAGCGUgGCGUGUGg -3'
miRNA:   3'- -UGUGUGUC-GCA--------UAuUCGCG-UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 130334 0.75 0.661871
Target:  5'- uGCGCACgaaaaauuuaguguGGUGUcgccggugauacagGUAGGCGCGCGUGCa -3'
miRNA:   3'- -UGUGUG--------------UCGCA--------------UAUUCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 128435 0.67 0.971926
Target:  5'- cCACGCuGCGgugGGGCGCGCaggguccGUGCu -3'
miRNA:   3'- uGUGUGuCGCauaUUCGCGUG-------CACGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.