miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 3' -51.9 NC_001798.1 + 121044 1.08 0.007624
Target:  5'- aACACACAGCGUAUAAGCGCACGUGCGc -3'
miRNA:   3'- -UGUGUGUCGCAUAUUCGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 1648 0.82 0.302139
Target:  5'- gGCGCGuCGGgGUAcAGGCGCGCGUGCGc -3'
miRNA:   3'- -UGUGU-GUCgCAUaUUCGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 36564 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 36522 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 36606 0.8 0.407048
Target:  5'- gGCGCGCGGCGgccgggcggGGGCGCGCG-GCGg -3'
miRNA:   3'- -UGUGUGUCGCaua------UUCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 153814 0.79 0.443617
Target:  5'- gGCAgGCGGCGgc-AGGCGCGgCGUGCGg -3'
miRNA:   3'- -UGUgUGUCGCauaUUCGCGU-GCACGC- -5'
5150 3' -51.9 NC_001798.1 + 1573 0.79 0.462581
Target:  5'- gGCAC-CAGCGUGUcgGGGCcgaaGCGCGUGCGc -3'
miRNA:   3'- -UGUGuGUCGCAUA--UUCG----CGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 26729 0.75 0.657655
Target:  5'- -gACGCGGCG-AUGGccGCGCGCGUGUGu -3'
miRNA:   3'- ugUGUGUCGCaUAUU--CGCGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 130334 0.75 0.661871
Target:  5'- uGCGCACgaaaaauuuaguguGGUGUcgccggugauacagGUAGGCGCGCGUGCa -3'
miRNA:   3'- -UGUGUG--------------UCGCA--------------UAUUCGCGUGCACGc -5'
5150 3' -51.9 NC_001798.1 + 2954 0.74 0.720184
Target:  5'- gGCGCGCAgGCGg---GGCGCgucgGCGUGCGg -3'
miRNA:   3'- -UGUGUGU-CGCauauUCGCG----UGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 143045 0.73 0.770165
Target:  5'- -uGCGCGGCGUu--GGCGCGCuUGCa -3'
miRNA:   3'- ugUGUGUCGCAuauUCGCGUGcACGc -5'
5150 3' -51.9 NC_001798.1 + 84723 0.73 0.78931
Target:  5'- cGCACGCGGUGUccu-GCGUAUGUGgGg -3'
miRNA:   3'- -UGUGUGUCGCAuauuCGCGUGCACgC- -5'
5150 3' -51.9 NC_001798.1 + 40729 0.72 0.825713
Target:  5'- cCACgACGGCGaUAUAgcacaGGCGCACG-GCGa -3'
miRNA:   3'- uGUG-UGUCGC-AUAU-----UCGCGUGCaCGC- -5'
5150 3' -51.9 NC_001798.1 + 9653 0.71 0.859119
Target:  5'- -gGCGCAGCGggcc-GCGCGCGgaggGCGc -3'
miRNA:   3'- ugUGUGUCGCauauuCGCGUGCa---CGC- -5'
5150 3' -51.9 NC_001798.1 + 68338 0.71 0.864618
Target:  5'- gACACccagcucugcgaagGCGGCGUAUGuGCagGUGCGUGCGg -3'
miRNA:   3'- -UGUG--------------UGUCGCAUAUuCG--CGUGCACGC- -5'
5150 3' -51.9 NC_001798.1 + 24551 0.71 0.866941
Target:  5'- gGCGC-CGGCGgugGUGgcggcggccGGCGCGCGgagGCGg -3'
miRNA:   3'- -UGUGuGUCGCa--UAU---------UCGCGUGCa--CGC- -5'
5150 3' -51.9 NC_001798.1 + 67931 0.7 0.881905
Target:  5'- gGCACACAGgGgugGGGUGCGauCGUGUGc -3'
miRNA:   3'- -UGUGUGUCgCauaUUCGCGU--GCACGC- -5'
5150 3' -51.9 NC_001798.1 + 134669 0.7 0.881905
Target:  5'- gACACccGCAGCGggucacGGCGCGgGUGCu -3'
miRNA:   3'- -UGUG--UGUCGCauau--UCGCGUgCACGc -5'
5150 3' -51.9 NC_001798.1 + 100186 0.7 0.881905
Target:  5'- -gGC-CGGCGgGUGAGCGCGCGcaUGCu -3'
miRNA:   3'- ugUGuGUCGCaUAUUCGCGUGC--ACGc -5'
5150 3' -51.9 NC_001798.1 + 20473 0.7 0.881905
Target:  5'- -aGCAgAGCGcc--GGUGCGCGUGCGc -3'
miRNA:   3'- ugUGUgUCGCauauUCGCGUGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.