Results 61 - 80 of 389 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5150 | 5' | -61.9 | NC_001798.1 | + | 124332 | 0.66 | 0.675457 |
Target: 5'- gCCG-GGACgGCGCGgaaaGCGuCAUCCgCCCg -3' miRNA: 3'- gGGCuCCUG-CGCGUg---UGC-GUGGG-GGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 142221 | 0.66 | 0.675457 |
Target: 5'- cCCCGcGGAgGCGUggugAUACaacaCACCCCCa -3' miRNA: 3'- -GGGCuCCUgCGCG----UGUGc---GUGGGGGg -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 34106 | 0.66 | 0.674497 |
Target: 5'- gCgUGGGGGCgguggGCGUACGgGCccgacccgcgccuGCCCCCCc -3' miRNA: 3'- -GgGCUCCUG-----CGCGUGUgCG-------------UGGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 75470 | 0.66 | 0.674497 |
Target: 5'- gCCCGGccgcggcccugcuGGACuucacccUGCGCAUGCugCCCCg -3' miRNA: 3'- -GGGCU-------------CCUGc------GCGUGUGCGugGGGGg -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 120611 | 0.67 | 0.669695 |
Target: 5'- cCCCGccgacuuuguuAGGACGgGCcgguCGuCGCcggucucgcgggccuGCCCCCCg -3' miRNA: 3'- -GGGC-----------UCCUGCgCGu---GU-GCG---------------UGGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 79507 | 0.67 | 0.669695 |
Target: 5'- gCCGGGGcgAgGCGUAUcuGCGCGCCggcggagacccggggCCCCu -3' miRNA: 3'- gGGCUCC--UgCGCGUG--UGCGUGG---------------GGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 32549 | 0.67 | 0.669695 |
Target: 5'- -aCGGGGAacguggcggaccugcUGCGgGC-CGCGgCCCCCg -3' miRNA: 3'- ggGCUCCU---------------GCGCgUGuGCGUgGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 118387 | 0.67 | 0.665849 |
Target: 5'- aCCUGGGGcuccUGCGCACGacaG-ACCuCCCCg -3' miRNA: 3'- -GGGCUCCu---GCGCGUGUg--CgUGG-GGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 50713 | 0.67 | 0.665849 |
Target: 5'- gCCCGcGGGucuGCGUGgGgACGaggccCACCCCCCc -3' miRNA: 3'- -GGGC-UCC---UGCGCgUgUGC-----GUGGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 65821 | 0.67 | 0.665849 |
Target: 5'- -gCGAGGAUgGCGCuCACGUugCCggugauggCCCg -3' miRNA: 3'- ggGCUCCUG-CGCGuGUGCGugGG--------GGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 125254 | 0.67 | 0.665849 |
Target: 5'- gUUGGGGcACgGCGUccuccgGCGCGCACUCCCg -3' miRNA: 3'- gGGCUCC-UG-CGCG------UGUGCGUGGGGGg -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 142638 | 0.67 | 0.665849 |
Target: 5'- aCCCu-GGACGaCGCAgACcCAaCCCCCg -3' miRNA: 3'- -GGGcuCCUGC-GCGUgUGcGUgGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 145893 | 0.67 | 0.665849 |
Target: 5'- cCCCGAc--CGC-CGC-CGCGCCCCaCCg -3' miRNA: 3'- -GGGCUccuGCGcGUGuGCGUGGGG-GG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 25184 | 0.67 | 0.665849 |
Target: 5'- cCCCGccGACGcCGCcgccgcggccGC-CGCGCCCCgCg -3' miRNA: 3'- -GGGCucCUGC-GCG----------UGuGCGUGGGGgG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 109073 | 0.67 | 0.664886 |
Target: 5'- uCCUGGGGGCcccgacgcccGCcgacaacggcucgGCGCugGaCGCCCUCCg -3' miRNA: 3'- -GGGCUCCUG----------CG-------------CGUGugC-GUGGGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 39792 | 0.67 | 0.660071 |
Target: 5'- uCCCGAGG-CGCGacCACACGCcgguggucgcgggugGCggaucgucggcUCCCCg -3' miRNA: 3'- -GGGCUCCuGCGC--GUGUGCG---------------UG-----------GGGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 111722 | 0.67 | 0.656216 |
Target: 5'- gCUGAcGGugGCcCGCuuggccccCGCGCCCCCg -3' miRNA: 3'- gGGCU-CCugCGcGUGu-------GCGUGGGGGg -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 79143 | 0.67 | 0.656216 |
Target: 5'- gCCGuggaggagcuGGGCGCGCGCGucaccaaGCACaCCgCCCu -3' miRNA: 3'- gGGCu---------CCUGCGCGUGUg------CGUG-GG-GGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 93362 | 0.67 | 0.656216 |
Target: 5'- aCCGAGGugGaCGaCGC-CGgGCCggcggaCCCCa -3' miRNA: 3'- gGGCUCCugC-GC-GUGuGCgUGG------GGGG- -5' |
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5150 | 5' | -61.9 | NC_001798.1 | + | 44729 | 0.67 | 0.656216 |
Target: 5'- -gCGAGGAgGUGauaACGCACCCgUCg -3' miRNA: 3'- ggGCUCCUgCGCgugUGCGUGGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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