miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 148640 0.66 0.685033
Target:  5'- cCCCGAGccaGGCGCccucccacuccuGCcCAC-CACCCCCa -3'
miRNA:   3'- -GGGCUC---CUGCG------------CGuGUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 5333 0.66 0.685033
Target:  5'- cCCCcAGGugGaacCGCAUuauGCGCGgCCCCg -3'
miRNA:   3'- -GGGcUCCugC---GCGUG---UGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 40319 0.66 0.685033
Target:  5'- cCCCGucGGGCGU-CAC-CGCccccGCCCCCg -3'
miRNA:   3'- -GGGCu-CCUGCGcGUGuGCG----UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 52694 0.66 0.685033
Target:  5'- cCCUGu--ACGCGCGgAC-CACCCCCg -3'
miRNA:   3'- -GGGCuccUGCGCGUgUGcGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 144208 0.66 0.685033
Target:  5'- uCCgCGAGGAgGCGCGCGguuaggggguuCGCGagCUCCg -3'
miRNA:   3'- -GG-GCUCCUgCGCGUGU-----------GCGUggGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49867 0.66 0.685033
Target:  5'- aCCCG-GGGCGCcccuCACG-ACCCCgCCc -3'
miRNA:   3'- -GGGCuCCUGCGcgu-GUGCgUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 81663 0.66 0.685033
Target:  5'- cCCCGcGGAUGC-CGCGCuuccUCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGcGUGUGcgu-GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 72280 0.66 0.684077
Target:  5'- uCCCGAGGugGgcagcaGCcugcugcugaucaGCAUGUACgCCCUg -3'
miRNA:   3'- -GGGCUCCugCg-----CG-------------UGUGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 89308 0.66 0.684077
Target:  5'- cCCCGGucuCGCGCGCGaccuccuCGCGCUcguCCCCg -3'
miRNA:   3'- -GGGCUccuGCGCGUGU-------GCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 116987 0.66 0.684077
Target:  5'- cCCCGGcccuGCGCGaccugGCGCGCGacgucccccugguCCCCCCg -3'
miRNA:   3'- -GGGCUcc--UGCGCg----UGUGCGU-------------GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 147501 0.66 0.681207
Target:  5'- cUCCGGGGggggggggcgccuGCGUGUgucucgugugagagaGCGCGCCCCUCg -3'
miRNA:   3'- -GGGCUCC-------------UGCGCGug-------------UGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 52490 0.66 0.679291
Target:  5'- -gCGGGGACGCGCGCcgGCGCagggacgacgcggcgGCCgCgCg -3'
miRNA:   3'- ggGCUCCUGCGCGUG--UGCG---------------UGGgGgG- -5'
5150 5' -61.9 NC_001798.1 + 27935 0.66 0.675457
Target:  5'- gCCGGGGucccgGCGCcgGC-CGCGCCCCg- -3'
miRNA:   3'- gGGCUCCug---CGCG--UGuGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 5400 0.66 0.675457
Target:  5'- gCCCGuuGGuCGCGC-CGC-CGCCgCUCCg -3'
miRNA:   3'- -GGGCu-CCuGCGCGuGUGcGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 49572 0.66 0.675457
Target:  5'- aCCgCGAGaccGCGCGcCugGCGCGCgUCCUg -3'
miRNA:   3'- -GG-GCUCc--UGCGC-GugUGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 56923 0.66 0.675457
Target:  5'- gCCCGGguaguagguggcGGcCGUGCACGuCGCcuuaaacggcugGCCCUCCa -3'
miRNA:   3'- -GGGCU------------CCuGCGCGUGU-GCG------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 66327 0.66 0.675457
Target:  5'- uCCCGGguacGGAUGCGCAgGUGgACcagaaCCCCCa -3'
miRNA:   3'- -GGGCU----CCUGCGCGUgUGCgUG-----GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 115288 0.66 0.675457
Target:  5'- aCCCGGccauGGAgcgcuuCGcCGCGCACGCcggggaccugguGCCCgCCCc -3'
miRNA:   3'- -GGGCU----CCU------GC-GCGUGUGCG------------UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 124332 0.66 0.675457
Target:  5'- gCCG-GGACgGCGCGgaaaGCGuCAUCCgCCCg -3'
miRNA:   3'- gGGCuCCUG-CGCGUg---UGC-GUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 104383 0.66 0.675457
Target:  5'- gUCGAGGcggucCGCGUACACGUugCCgUUCg -3'
miRNA:   3'- gGGCUCCu----GCGCGUGUGCGugGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.