miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 23956 0.66 0.704062
Target:  5'- gCUGGGcGACGCgGCGCAgcaGUACgCCCUg -3'
miRNA:   3'- gGGCUC-CUGCG-CGUGUg--CGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 149304 0.66 0.704062
Target:  5'- aCCgGAGGcCGUGgAaguccaGCGCGCCCaCCa -3'
miRNA:   3'- -GGgCUCCuGCGCgUg-----UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 92566 0.66 0.704062
Target:  5'- gCCCGcauuuuGGcuuCGCGgACuACGCGCCCCg- -3'
miRNA:   3'- -GGGCu-----CCu--GCGCgUG-UGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 142108 0.66 0.704062
Target:  5'- aCCCcAGGGCGuCGCuaacgaGCGCGCUgCCg -3'
miRNA:   3'- -GGGcUCCUGC-GCGug----UGCGUGGgGGg -5'
5150 5' -61.9 NC_001798.1 + 148100 0.66 0.704062
Target:  5'- gCCGcuagggaaagguAGGcACGCGCGCGgugugucgacuUGCAUgCCCCg -3'
miRNA:   3'- gGGC------------UCC-UGCGCGUGU-----------GCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 130038 0.66 0.704062
Target:  5'- cCCCGcGGACcuugGCGCAUAC---CCCUCCa -3'
miRNA:   3'- -GGGCuCCUG----CGCGUGUGcguGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 78865 0.66 0.703115
Target:  5'- gCCUGGGGGCGCucuuugauacucgGCGcCGCGUcgacGCCCUgCg -3'
miRNA:   3'- -GGGCUCCUGCG-------------CGU-GUGCG----UGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 84398 0.66 0.703115
Target:  5'- uCUCGAGGGCGgGUugGaugGCgaguaggggcccgACUCCCCa -3'
miRNA:   3'- -GGGCUCCUGCgCGugUg--CG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148843 0.66 0.70122
Target:  5'- cCUCGGGGGugggggcggcuucuCGUGC-C-CGC-CCCCCCu -3'
miRNA:   3'- -GGGCUCCU--------------GCGCGuGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 74768 0.66 0.698373
Target:  5'- gCCCc-GGACGcCGCggccucggguccaccGCACGcCGCCCCgCCc -3'
miRNA:   3'- -GGGcuCCUGC-GCG---------------UGUGC-GUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 32377 0.66 0.694571
Target:  5'- gCCCGGGGcccgcgacccgGCGCccggccuCACGCGCuACCUgCCCa -3'
miRNA:   3'- -GGGCUCC-----------UGCGc------GUGUGCG-UGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 47284 0.66 0.694571
Target:  5'- gCCUGuucGGGGCGUGUcuguC-CGUugCCCCCc -3'
miRNA:   3'- -GGGC---UCCUGCGCGu---GuGCGugGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 121564 0.66 0.694571
Target:  5'- gCCCGuGGGCgaccuGUGCcCGCGUGCUCCUg -3'
miRNA:   3'- -GGGCuCCUG-----CGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 127884 0.66 0.694571
Target:  5'- aCCGGGGGCcccGgGUucccAUugGCcccagaGCCCCCCa -3'
miRNA:   3'- gGGCUCCUG---CgCG----UGugCG------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 2604 0.66 0.694571
Target:  5'- uUCGGGGG-GCGCGgG-GCGCCgCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUgUgCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 21843 0.66 0.694571
Target:  5'- cCCCGggcAGGGCGCcaGUGCuCGCACUuugCCCUa -3'
miRNA:   3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 70089 0.66 0.694571
Target:  5'- gCCGGucgccaugucGGACaGCGCGCuccaggucccgGCGCccgccggcaugACCCCCCc -3'
miRNA:   3'- gGGCU----------CCUG-CGCGUG-----------UGCG-----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 123253 0.66 0.691714
Target:  5'- gUCCGcuGACGCGUGCuuuUGUuccaccgcucacccACCCCCCc -3'
miRNA:   3'- -GGGCucCUGCGCGUGu--GCG--------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 49867 0.66 0.685033
Target:  5'- aCCCG-GGGCGCcccuCACG-ACCCCgCCc -3'
miRNA:   3'- -GGGCuCCUGCGcgu-GUGCgUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 144208 0.66 0.685033
Target:  5'- uCCgCGAGGAgGCGCGCGguuaggggguuCGCGagCUCCg -3'
miRNA:   3'- -GG-GCUCCUgCGCGUGU-----------GCGUggGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.