miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 5333 0.66 0.685033
Target:  5'- cCCCcAGGugGaacCGCAUuauGCGCGgCCCCg -3'
miRNA:   3'- -GGGcUCCugC---GCGUG---UGCGUgGGGGg -5'
5150 5' -61.9 NC_001798.1 + 5400 0.66 0.675457
Target:  5'- gCCCGuuGGuCGCGC-CGC-CGCCgCUCCg -3'
miRNA:   3'- -GGGCu-CCuGCGCGuGUGcGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 5738 0.71 0.400543
Target:  5'- gCCCGGGGccCGCGUcauccCGCGCuCCgCCCCa -3'
miRNA:   3'- -GGGCUCCu-GCGCGu----GUGCGuGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 5876 0.68 0.569555
Target:  5'- gCCCGGGGccCGCGUcaucccGCGgGCuCCgCCCCg -3'
miRNA:   3'- -GGGCUCCu-GCGCG------UGUgCGuGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 7388 0.68 0.5983
Target:  5'- aCCCaGGGuccCGCGCAUAcccagggaccCGCgACCCCCa -3'
miRNA:   3'- -GGGcUCCu--GCGCGUGU----------GCG-UGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 8392 0.67 0.646566
Target:  5'- aCUGAGGAacUGgGUuacuGCACuuGCCCCCCc -3'
miRNA:   3'- gGGCUCCU--GCgCG----UGUGcgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 9007 0.68 0.5983
Target:  5'- uCCCGcacAGGACG-GCcccgagaccCAC-CGCCCCCCg -3'
miRNA:   3'- -GGGC---UCCUGCgCGu--------GUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 9128 0.72 0.361573
Target:  5'- gCCgCGAGGuggucugcggcACGCGgGCGCgGCGCCgCCCg -3'
miRNA:   3'- -GG-GCUCC-----------UGCGCgUGUG-CGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 9433 0.66 0.704062
Target:  5'- uCCgGAGGGuccUGC-CACAgggacccguCGCGCUCCCCc -3'
miRNA:   3'- -GGgCUCCU---GCGcGUGU---------GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 9608 0.73 0.305562
Target:  5'- gCCCGAGGGCG-GCcaGCAacagggccgcccccaGCACCgCCCCg -3'
miRNA:   3'- -GGGCUCCUGCgCG--UGUg--------------CGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 10622 0.7 0.442089
Target:  5'- uUCCGGGGcGCGCauGCACGcCGCAUCCacgaCCg -3'
miRNA:   3'- -GGGCUCC-UGCG--CGUGU-GCGUGGGg---GG- -5'
5150 5' -61.9 NC_001798.1 + 14792 0.69 0.504088
Target:  5'- gCUCGGGuGCGCGUAuCGCcuGCGCCCCgCCc -3'
miRNA:   3'- -GGGCUCcUGCGCGU-GUG--CGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 15377 0.71 0.408653
Target:  5'- gCCGuGGGCGCgGCGgAgGCGCCCaCCg -3'
miRNA:   3'- gGGCuCCUGCG-CGUgUgCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 16153 0.67 0.617584
Target:  5'- aCCGGGGGCaccgaGCGcCACGgGCGgCCCgCg -3'
miRNA:   3'- gGGCUCCUG-----CGC-GUGUgCGUgGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 16189 0.72 0.346741
Target:  5'- aCCGGGGGgaCGCACGgGcCGCCCUCCg -3'
miRNA:   3'- gGGCUCCUgcGCGUGUgC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 16431 0.7 0.485963
Target:  5'- cUuuGGGGACGgcggcucgcCGC-CGCGaCACCCUCCa -3'
miRNA:   3'- -GggCUCCUGC---------GCGuGUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 16887 0.71 0.397328
Target:  5'- gCCCGAGGGcCGCGUcuuuuugugcaaaaACAUccaaccaGCcCCCCCCu -3'
miRNA:   3'- -GGGCUCCU-GCGCG--------------UGUG-------CGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 17715 0.74 0.261112
Target:  5'- cCUCGuGGcuCGUGCugGCGUACCaCCCCg -3'
miRNA:   3'- -GGGCuCCu-GCGCGugUGCGUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 18260 0.69 0.541162
Target:  5'- gCCCGGGGGC-CaggUACGCAUCCUCCg -3'
miRNA:   3'- -GGGCUCCUGcGcguGUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 18436 0.68 0.59253
Target:  5'- cCCCGAGcGACGgGCcCcgguguuuuaagaaGCGgcaguuugucgacaCACCCCCCa -3'
miRNA:   3'- -GGGCUC-CUGCgCGuG--------------UGC--------------GUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.