miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 80 0.71 0.416864
Target:  5'- -gCGGcGGGCGgGCGgcagggcagcccCGCGCGCCCCCUu -3'
miRNA:   3'- ggGCU-CCUGCgCGU------------GUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 148 0.68 0.588688
Target:  5'- cCCCGcGGGCGC-CGCcC-CuCCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGcGUGuGcGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 192 0.73 0.33949
Target:  5'- uCCCGcGGGCGCccccGCGCGgcuuuuuuccCGCGCCCgCCCc -3'
miRNA:   3'- -GGGCuCCUGCG----CGUGU----------GCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 301 0.67 0.617584
Target:  5'- cCCCGAaGACGC-CAguCGCACCaCCgCu -3'
miRNA:   3'- -GGGCUcCUGCGcGUguGCGUGG-GGgG- -5'
5150 5' -61.9 NC_001798.1 + 360 0.66 0.713499
Target:  5'- aCCCGcccGCcCGCACACGguUCCCCg -3'
miRNA:   3'- -GGGCuccUGcGCGUGUGCguGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 655 0.73 0.325319
Target:  5'- cCCCGcGGGCGCGgGagACGUGCCgCCCg -3'
miRNA:   3'- -GGGCuCCUGCGCgUg-UGCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 1310 0.66 0.685033
Target:  5'- gCUCGAGcaGCGCcCGCGCGCAgaaCUCCCg -3'
miRNA:   3'- -GGGCUCc-UGCGcGUGUGCGUg--GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 1360 0.69 0.504088
Target:  5'- gCCGGGccgcCGCGCACGgcguCGCGCCCCa- -3'
miRNA:   3'- gGGCUCcu--GCGCGUGU----GCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 1584 0.7 0.464633
Target:  5'- gUCGGGGccgaagcGCGUGCGCACGCgguaccgcacguugGCCCCgCg -3'
miRNA:   3'- gGGCUCC-------UGCGCGUGUGCG--------------UGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 1653 0.71 0.408653
Target:  5'- gUCGGGGuacagGCGCGCGUGCGCGgCCUCCa -3'
miRNA:   3'- gGGCUCC-----UGCGCGUGUGCGUgGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 1986 0.66 0.713499
Target:  5'- gUCGGGGGCGCGguCcaguUGC-CCgCCCa -3'
miRNA:   3'- gGGCUCCUGCGCguGu---GCGuGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 2225 0.72 0.372215
Target:  5'- gCCCGAGGcGCGCagcgggccgaaggcgGCGgGCGCGCCgCCg -3'
miRNA:   3'- -GGGCUCC-UGCG---------------CGUgUGCGUGGgGGg -5'
5150 5' -61.9 NC_001798.1 + 2604 0.66 0.694571
Target:  5'- uUCGGGGG-GCGCGgG-GCGCCgCCCg -3'
miRNA:   3'- gGGCUCCUgCGCGUgUgCGUGGgGGG- -5'
5150 5' -61.9 NC_001798.1 + 2640 0.76 0.217495
Target:  5'- gCCGGGGcggggcucuUGCGCuuGCGCGCCUCCCg -3'
miRNA:   3'- gGGCUCCu--------GCGCGugUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 3234 0.7 0.468155
Target:  5'- gCCCcAGGGCG-GCGa--GCACCCCCg -3'
miRNA:   3'- -GGGcUCCUGCgCGUgugCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 3564 0.66 0.713499
Target:  5'- aCCCcAGGugGgGCACGgccCGCGCCaCgCUg -3'
miRNA:   3'- -GGGcUCCugCgCGUGU---GCGUGG-GgGG- -5'
5150 5' -61.9 NC_001798.1 + 3665 0.69 0.513259
Target:  5'- uCCCc-GGGCGC-CACGCGCggguucuggaGCCaCCCCa -3'
miRNA:   3'- -GGGcuCCUGCGcGUGUGCG----------UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 3796 0.73 0.314303
Target:  5'- gCCCGAGGccucgaaccgggccCGCGCcuccuccgccuCGgGCGCCCCCCa -3'
miRNA:   3'- -GGGCUCCu-------------GCGCGu----------GUgCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 3889 0.68 0.559096
Target:  5'- cCCCGGGGGCGgGgGgccggccccgggcCACG-GCUCCCCg -3'
miRNA:   3'- -GGGCUCCUGCgCgU-------------GUGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 4143 0.71 0.416864
Target:  5'- cCCCG-GGGCcCuCGCGgGCACCCCCg -3'
miRNA:   3'- -GGGCuCCUGcGcGUGUgCGUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.