miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 121079 1.13 0.000583
Target:  5'- cCCCGAGGACGCGCACACGCACCCCCCa -3'
miRNA:   3'- -GGGCUCCUGCGCGUGUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31691 0.85 0.052047
Target:  5'- gCCGGuGGACGCGCAC-CGCGCgCCCCg -3'
miRNA:   3'- gGGCU-CCUGCGCGUGuGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 32611 0.83 0.072449
Target:  5'- cCCCGAGcACGCGCGCaacuGCGUgagGCCCCCCg -3'
miRNA:   3'- -GGGCUCcUGCGCGUG----UGCG---UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 31568 0.82 0.080145
Target:  5'- gUCG-GGGCGCGC-CGCGCGCCCCCg -3'
miRNA:   3'- gGGCuCCUGCGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 52635 0.82 0.088619
Target:  5'- cCCCGAGGugG-GCACGuaCACCCCCCu -3'
miRNA:   3'- -GGGCUCCugCgCGUGUgcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 26040 0.81 0.095527
Target:  5'- gUgGAGGcCGCGCACGCGCGCCuguaCCCCg -3'
miRNA:   3'- gGgCUCCuGCGCGUGUGCGUGG----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 150676 0.81 0.101417
Target:  5'- gCCGcGGcgucuucgcccacccGCGCGCcuGCGCGCGCCCCCCg -3'
miRNA:   3'- gGGCuCC---------------UGCGCG--UGUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133347 0.81 0.105532
Target:  5'- cCCCGAGGACGUGCugGagcUGCugaaCCCCCa -3'
miRNA:   3'- -GGGCUCCUGCGCGugU---GCGug--GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 133757 0.8 0.113674
Target:  5'- gCCCGcgugGGGGCGCugcuuGCGCACGCACgCCUCCg -3'
miRNA:   3'- -GGGC----UCCUGCG-----CGUGUGCGUG-GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 145386 0.8 0.116516
Target:  5'- aCCCGAgGGGCGaCGCGgggaaaGCGCGCCCCCg -3'
miRNA:   3'- -GGGCU-CCUGC-GCGUg-----UGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 103327 0.79 0.125137
Target:  5'- uCUCGAGGACGCGCuccagcuGCACGCACgcgaucagCCCCa -3'
miRNA:   3'- -GGGCUCCUGCGCG-------UGUGCGUGg-------GGGG- -5'
5150 5' -61.9 NC_001798.1 + 25079 0.79 0.125445
Target:  5'- cCCCGgccAGGGCGCcgccgggcgGCGCccCGCGCCCCCCg -3'
miRNA:   3'- -GGGC---UCCUGCG---------CGUGu-GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 130544 0.79 0.126682
Target:  5'- cCCCGAGGugggggcccaccaacACGCGCACGuagugacacaGCACCCCCUc -3'
miRNA:   3'- -GGGCUCC---------------UGCGCGUGUg---------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 29988 0.79 0.128559
Target:  5'- cCCCGuGGGC-CGUGCGC-CGCCCCCCg -3'
miRNA:   3'- -GGGCuCCUGcGCGUGUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 28379 0.79 0.128559
Target:  5'- gCCCGcGGACGCGC-CGCGCgggaagguacGCCUCCCc -3'
miRNA:   3'- -GGGCuCCUGCGCGuGUGCG----------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 91041 0.78 0.145229
Target:  5'- gCgGAGGACGuCGCGCuCGUcCCCCCCg -3'
miRNA:   3'- gGgCUCCUGC-GCGUGuGCGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 100296 0.78 0.145229
Target:  5'- gCCGGGGACGUGCuACAgcCGCCCCCUg -3'
miRNA:   3'- gGGCUCCUGCGCG-UGUgcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 88752 0.78 0.148791
Target:  5'- aCCGGGGGCGCGCAUGCcggcCGCCUCCg -3'
miRNA:   3'- gGGCUCCUGCGCGUGUGc---GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 48377 0.78 0.148791
Target:  5'- cCCCGcGGGGCGUGCcgccgcgaccGCACGgGCCCCCg -3'
miRNA:   3'- -GGGC-UCCUGCGCG----------UGUGCgUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 86155 0.78 0.148791
Target:  5'- aCCGcGGGGCGCGCAUGCGCgacgcgGCCCCgCg -3'
miRNA:   3'- gGGC-UCCUGCGCGUGUGCG------UGGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.