miRNA display CGI


Results 21 - 40 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 81745 0.78 0.159961
Target:  5'- uCCCGccGGACGCGUgccaaaucGCGCGCGCCCCg- -3'
miRNA:   3'- -GGGCu-CCUGCGCG--------UGUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 150166 0.78 0.163849
Target:  5'- uUCCGGGGGCGgGC-CGC-CGCCCCCUc -3'
miRNA:   3'- -GGGCUCCUGCgCGuGUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 36643 0.78 0.163849
Target:  5'- -gCGGGGGCGCGCuuucccCGCGuCGCCCCUCg -3'
miRNA:   3'- ggGCUCCUGCGCGu-----GUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150469 0.78 0.163849
Target:  5'- gCgCGGGGGCGCGCG-GCGCGCCCCg- -3'
miRNA:   3'- -GgGCUCCUGCGCGUgUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 81792 0.78 0.167822
Target:  5'- cCCCGAggGGugGCGUcCGCcgGCACUCCCCg -3'
miRNA:   3'- -GGGCU--CCugCGCGuGUG--CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 129691 0.77 0.171881
Target:  5'- gCCGGGGccccaguaccgGCGCGCAU-CGgACCCCCCa -3'
miRNA:   3'- gGGCUCC-----------UGCGCGUGuGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 47868 0.77 0.171881
Target:  5'- cCCCGuGGGCGCcggcggGCGCuCGCACgCCCCu -3'
miRNA:   3'- -GGGCuCCUGCG------CGUGuGCGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 112002 0.77 0.180263
Target:  5'- cCCUGucucGcGCGCGCACGCGCACCCCg- -3'
miRNA:   3'- -GGGCu---CcUGCGCGUGUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 132147 0.77 0.189005
Target:  5'- gCCGGGGGCcgGCGgGCgGgGCGCCCCCCc -3'
miRNA:   3'- gGGCUCCUG--CGCgUG-UgCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 135491 0.77 0.192605
Target:  5'- cCCCGGGGACGCggacgccGCGCACGgcgcgauccaggaCGCCCgCCg -3'
miRNA:   3'- -GGGCUCCUGCG-------CGUGUGC-------------GUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 34507 0.77 0.195344
Target:  5'- uUCGAgGGGCGCGCucucucacacgagacACACGCaggcGCCCCCCc -3'
miRNA:   3'- gGGCU-CCUGCGCG---------------UGUGCG----UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 123433 0.76 0.198118
Target:  5'- aCCG-GGGCGCcccccccgaCGCGCGCGCCCCCg -3'
miRNA:   3'- gGGCuCCUGCGc--------GUGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 82364 0.76 0.202816
Target:  5'- aCCCGccgcgcGGACGCGCauccGCGCGCGCUcggugCCCCa -3'
miRNA:   3'- -GGGCu-----CCUGCGCG----UGUGCGUGG-----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 139288 0.76 0.202816
Target:  5'- cCUCGGGGGCGCauaGCGcCGCGuCGCCgCCCCg -3'
miRNA:   3'- -GGGCUCCUGCG---CGU-GUGC-GUGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 49270 0.76 0.202816
Target:  5'- --gGGGGAUGCGCACGuccccgaGCGCUCCCCg -3'
miRNA:   3'- gggCUCCUGCGCGUGUg------CGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 95031 0.76 0.204723
Target:  5'- gCCGGGGcccGCGCGCugauggacucccucgACGCGCACCCCg- -3'
miRNA:   3'- gGGCUCC---UGCGCG---------------UGUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 24714 0.76 0.207611
Target:  5'- gCCCGGGGccCGCGgGCGCGgcCGCCCCgCCg -3'
miRNA:   3'- -GGGCUCCu-GCGCgUGUGC--GUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 134074 0.76 0.207611
Target:  5'- gCgGGGGAgGCGCGCGCGCGCUUCgCg -3'
miRNA:   3'- gGgCUCCUgCGCGUGUGCGUGGGGgG- -5'
5150 5' -61.9 NC_001798.1 + 2640 0.76 0.217495
Target:  5'- gCCGGGGcggggcucuUGCGCuuGCGCGCCUCCCg -3'
miRNA:   3'- gGGCUCCu--------GCGCGugUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 26092 0.76 0.21952
Target:  5'- gCCgCGGGGccaacgugcgguaccGCGUGCGCACGCGCUucggCCCCg -3'
miRNA:   3'- -GG-GCUCC---------------UGCGCGUGUGCGUGG----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.