miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 154530 0.73 0.33949
Target:  5'- uCCCGcGGGCGCccccGCGCGgcuuuuuuccCGCGCCCgCCCc -3'
miRNA:   3'- -GGGCuCCUGCG----CGUGU----------GCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 154486 0.68 0.588688
Target:  5'- cCCCGcGGGCGC-CGCcC-CuCCCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGcGUGuGcGuGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 154418 0.71 0.416864
Target:  5'- -gCGGcGGGCGgGCGgcagggcagcccCGCGCGCCCCCUu -3'
miRNA:   3'- ggGCU-CCUGCgCGU------------GUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 154270 0.66 0.717257
Target:  5'- uCCCGGcuGGCGUGCGCagcccgggccguguuGCGgGCCCUCUu -3'
miRNA:   3'- -GGGCUc-CUGCGCGUG---------------UGCgUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 153967 0.69 0.504088
Target:  5'- -gCGAGGACGCgGCcgGCGCGCUCUCg -3'
miRNA:   3'- ggGCUCCUGCG-CGugUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 153246 0.69 0.541162
Target:  5'- gCgGAGGACcCGCGCGC-CGCCgCCgCCg -3'
miRNA:   3'- gGgCUCCUGcGCGUGUGcGUGG-GG-GG- -5'
5150 5' -61.9 NC_001798.1 + 153034 0.71 0.416864
Target:  5'- gCCCGcgcGGcGGCGCGCgguuggccgGCGC-CGCCCCCUg -3'
miRNA:   3'- -GGGC---UC-CUGCGCG---------UGUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 152565 0.69 0.541162
Target:  5'- cCCCGGGGACcaaccggguguacucCaagaaccccauuaGCAUGCGcCGCCCCCCg -3'
miRNA:   3'- -GGGCUCCUGc--------------G-------------CGUGUGC-GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 152047 0.67 0.636907
Target:  5'- gUCgGGGGGCG-GCGCACGgccCACggggguCCCCCg -3'
miRNA:   3'- -GGgCUCCUGCgCGUGUGC---GUG------GGGGG- -5'
5150 5' -61.9 NC_001798.1 + 151624 0.68 0.549635
Target:  5'- gCCGGGGGCGUgGC-CGCGUccaucagGCCCgCCu -3'
miRNA:   3'- gGGCUCCUGCG-CGuGUGCG-------UGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 151481 0.68 0.569555
Target:  5'- -gCGGGGcgaucucgucCGUGCACACGgcacacacguCGCCCCCCc -3'
miRNA:   3'- ggGCUCCu---------GCGCGUGUGC----------GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 151184 0.68 0.607934
Target:  5'- -gCGAcaGGGCGCGgAC-CGUguguCCCCCCa -3'
miRNA:   3'- ggGCU--CCUGCGCgUGuGCGu---GGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150880 0.66 0.713499
Target:  5'- uUCCGcGGGuCGCccccGCAC-CGcCGCCCCCg -3'
miRNA:   3'- -GGGC-UCCuGCG----CGUGuGC-GUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 150676 0.81 0.101417
Target:  5'- gCCGcGGcgucuucgcccacccGCGCGCcuGCGCGCGCCCCCCg -3'
miRNA:   3'- gGGCuCC---------------UGCGCG--UGUGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150469 0.78 0.163849
Target:  5'- gCgCGGGGGCGCGCG-GCGCGCCCCg- -3'
miRNA:   3'- -GgGCUCCUGCGCGUgUGCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 150344 0.66 0.722874
Target:  5'- aCCG-GGGCGCGCgguGCGCGUCCaCCg -3'
miRNA:   3'- gGGCuCCUGCGCGug-UGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 150264 0.68 0.550579
Target:  5'- uCCCGAcc-CGCGCGCGucgguCGCGCCUgCCCg -3'
miRNA:   3'- -GGGCUccuGCGCGUGU-----GCGUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 150166 0.78 0.163849
Target:  5'- uUCCGGGGGCGgGC-CGC-CGCCCCCUc -3'
miRNA:   3'- -GGGCUCCUGCgCGuGUGcGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 150042 0.69 0.503174
Target:  5'- gUCCGGGGcccgGCGCgGCGC-CGCccucuuggcccccACCCCCUg -3'
miRNA:   3'- -GGGCUCC----UGCG-CGUGuGCG-------------UGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 149780 0.71 0.400543
Target:  5'- cCCCagcgccGGACGCGgACGCGaCGCUCCCa -3'
miRNA:   3'- -GGGcu----CCUGCGCgUGUGC-GUGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.