miRNA display CGI


Results 41 - 60 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5150 5' -61.9 NC_001798.1 + 18604 0.7 0.468155
Target:  5'- cCCCGGGucCGCGCGC-CGU-CCCgCCg -3'
miRNA:   3'- -GGGCUCcuGCGCGUGuGCGuGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 19826 0.66 0.675457
Target:  5'- uUCUGGGGcuuccguUGCGCgACACGCGCCCg-- -3'
miRNA:   3'- -GGGCUCCu------GCGCG-UGUGCGUGGGggg -5'
5150 5' -61.9 NC_001798.1 + 21755 0.7 0.442089
Target:  5'- aCCG-GGACGCcggcccuuuauGUGCGCGaggaacggccCGCCCCCCg -3'
miRNA:   3'- gGGCuCCUGCG-----------CGUGUGC----------GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 21843 0.66 0.694571
Target:  5'- cCCCGggcAGGGCGCcaGUGCuCGCACUuugCCCUa -3'
miRNA:   3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 21980 0.7 0.450687
Target:  5'- cCCCGggcAGGGCGCcaGCGCuCGCACUuugCCCUa -3'
miRNA:   3'- -GGGC---UCCUGCG--CGUGuGCGUGG---GGGG- -5'
5150 5' -61.9 NC_001798.1 + 23056 0.69 0.521571
Target:  5'- -aCGAGGcCGUuCGCACGaucccguCGCCCCCCc -3'
miRNA:   3'- ggGCUCCuGCGcGUGUGC-------GUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 23479 0.7 0.477018
Target:  5'- -aCGAcGACGC-CGCcCGCGCCCCCg -3'
miRNA:   3'- ggGCUcCUGCGcGUGuGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 23575 0.72 0.384636
Target:  5'- cCCCGGGGGCgGCGCcccgGC-CGaGCCCgCCCa -3'
miRNA:   3'- -GGGCUCCUG-CGCG----UGuGCgUGGG-GGG- -5'
5150 5' -61.9 NC_001798.1 + 23830 0.72 0.379946
Target:  5'- cCCCG-GGGCGCGUGCuguacggcgggcuggGCGacaGCCgCCCCg -3'
miRNA:   3'- -GGGCuCCUGCGCGUG---------------UGCg--UGG-GGGG- -5'
5150 5' -61.9 NC_001798.1 + 23888 0.66 0.707844
Target:  5'- gCCCGAGGcggaggagGCGCGgGCccgguucgaggccucGgGCGCCCCg- -3'
miRNA:   3'- -GGGCUCC--------UGCGCgUG---------------UgCGUGGGGgg -5'
5150 5' -61.9 NC_001798.1 + 23956 0.66 0.704062
Target:  5'- gCUGGGcGACGCgGCGCAgcaGUACgCCCUg -3'
miRNA:   3'- gGGCUC-CUGCG-CGUGUg--CGUGgGGGG- -5'
5150 5' -61.9 NC_001798.1 + 24052 0.7 0.442089
Target:  5'- gCCCGGGGACGUgGCGCugG-ACCaggCCUg -3'
miRNA:   3'- -GGGCUCCUGCG-CGUGugCgUGGg--GGG- -5'
5150 5' -61.9 NC_001798.1 + 24124 0.67 0.646566
Target:  5'- cUCCGgcAGcGugGCGCGgGcCGUGCCCCaCCu -3'
miRNA:   3'- -GGGC--UC-CugCGCGUgU-GCGUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 24267 0.67 0.656216
Target:  5'- gCCUGc-GcCGCGCcUACGCGCCCCUg -3'
miRNA:   3'- -GGGCucCuGCGCGuGUGCGUGGGGGg -5'
5150 5' -61.9 NC_001798.1 + 24482 0.74 0.26704
Target:  5'- gCCCuGGGGCGCcugaGCGC-CGCGCCCgCCu -3'
miRNA:   3'- -GGGcUCCUGCG----CGUGuGCGUGGGgGG- -5'
5150 5' -61.9 NC_001798.1 + 24714 0.76 0.207611
Target:  5'- gCCCGGGGccCGCGgGCGCGgcCGCCCCgCCg -3'
miRNA:   3'- -GGGCUCCu-GCGCgUGUGC--GUGGGG-GG- -5'
5150 5' -61.9 NC_001798.1 + 25047 0.72 0.384636
Target:  5'- gCCGcGGGAgGCGCGCAaGCGCaagagCCCCg -3'
miRNA:   3'- gGGC-UCCUgCGCGUGUgCGUGg----GGGG- -5'
5150 5' -61.9 NC_001798.1 + 25079 0.79 0.125445
Target:  5'- cCCCGgccAGGGCGCcgccgggcgGCGCccCGCGCCCCCCg -3'
miRNA:   3'- -GGGC---UCCUGCG---------CGUGu-GCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25146 0.72 0.346741
Target:  5'- cCCCGcGGccgccccucccGCGgGgGC-CGCGCCCCCCg -3'
miRNA:   3'- -GGGCuCC-----------UGCgCgUGuGCGUGGGGGG- -5'
5150 5' -61.9 NC_001798.1 + 25184 0.67 0.665849
Target:  5'- cCCCGccGACGcCGCcgccgcggccGC-CGCGCCCCgCg -3'
miRNA:   3'- -GGGCucCUGC-GCG----------UGuGCGUGGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.