miRNA display CGI


Results 41 - 60 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 97530 0.67 0.917641
Target:  5'- gAGGAGgggGGGCGGAGGCguGGcgCGGg- -3'
miRNA:   3'- -UCCUCag-CCCGUCUUUG--UCuaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 51474 0.67 0.917641
Target:  5'- cGGGccgcguGUCGGGCccGGAGcuGCAGG-CGGCa -3'
miRNA:   3'- -UCCu-----CAGCCCG--UCUU--UGUCUaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 75885 0.67 0.917641
Target:  5'- -cGGGUCGaGGCGGAGGCccgcgAGAUgcgcgaGGCCu -3'
miRNA:   3'- ucCUCAGC-CCGUCUUUG-----UCUAg-----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 73656 0.67 0.915907
Target:  5'- gGGGGGuUCGGGCggcGGAAACaacaguacucaucgGGAcgccCGGCCc -3'
miRNA:   3'- -UCCUC-AGCCCG---UCUUUG--------------UCUa---GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 113764 0.67 0.911777
Target:  5'- gGGGGGUauuaaGGCAGggGCAGcUC-GCCc -3'
miRNA:   3'- -UCCUCAgc---CCGUCuuUGUCuAGcCGG- -5'
5151 5' -54.8 NC_001798.1 + 148380 0.67 0.911777
Target:  5'- gAGGAGgggCGGGCGuGGcgGGCAGGUgugCGGgCg -3'
miRNA:   3'- -UCCUCa--GCCCGU-CU--UUGUCUA---GCCgG- -5'
5151 5' -54.8 NC_001798.1 + 14982 0.67 0.905675
Target:  5'- cGGGAGcUUGGGCGGggGggcgaggcguguUGGGggcgagCGGCCc -3'
miRNA:   3'- -UCCUC-AGCCCGUCuuU------------GUCUa-----GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 101017 0.67 0.905675
Target:  5'- cGGAGggGGGCGGGuuuGACgAGGccaagUUGGCCg -3'
miRNA:   3'- uCCUCagCCCGUCU---UUG-UCU-----AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 51031 0.67 0.905675
Target:  5'- uGGAGUCGGGUuaauGGGGuaccuGCGGG-CGGUg -3'
miRNA:   3'- uCCUCAGCCCG----UCUU-----UGUCUaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 15687 0.67 0.899336
Target:  5'- gGGGAGUagUGGuuGCGGggGCGG-UCGGUUc -3'
miRNA:   3'- -UCCUCA--GCC--CGUCuuUGUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 78921 0.67 0.899336
Target:  5'- gAGGAGgcCGaGGCGGAGugGGAcgaGGUCu -3'
miRNA:   3'- -UCCUCa-GC-CCGUCUUugUCUag-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 153637 0.67 0.899336
Target:  5'- aGGGGGUCGGaGgGGAGGCGuaccuucccGcgCGGCg -3'
miRNA:   3'- -UCCUCAGCC-CgUCUUUGU---------CuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 63267 0.67 0.897388
Target:  5'- cGGGGGcggGGGCGGAAuacaggggcugcauAUGGAUCaGGCCc -3'
miRNA:   3'- -UCCUCag-CCCGUCUU--------------UGUCUAG-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 10972 0.68 0.892763
Target:  5'- -aGAGUCGGGCGGcGACuccuuaaauGcgCGGCg -3'
miRNA:   3'- ucCUCAGCCCGUCuUUGu--------CuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 11180 0.68 0.892763
Target:  5'- gGGGcGGUgGGGCGGGccuGCcGAaCGGCCc -3'
miRNA:   3'- -UCC-UCAgCCCGUCUu--UGuCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 19856 0.68 0.892763
Target:  5'- cGGGG-CGGGUAGGc-CAGAgcguUCGGCg -3'
miRNA:   3'- uCCUCaGCCCGUCUuuGUCU----AGCCGg -5'
5151 5' -54.8 NC_001798.1 + 96697 0.68 0.892763
Target:  5'- cGGGAGUUuaugGuGGCGGcGGugGGGUCgGGCCu -3'
miRNA:   3'- -UCCUCAG----C-CCGUC-UUugUCUAG-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 135383 0.68 0.892093
Target:  5'- cGGGGUCauGGccgccgucugccuGCAGAucgAGCAGA-CGGCCa -3'
miRNA:   3'- uCCUCAG--CC-------------CGUCU---UUGUCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 136666 0.68 0.88596
Target:  5'- gAGGAcGggGGGCGGAuuguuggccAGCAGGUagugGGCCa -3'
miRNA:   3'- -UCCU-CagCCCGUCU---------UUGUCUAg---CCGG- -5'
5151 5' -54.8 NC_001798.1 + 26484 0.68 0.88596
Target:  5'- uGGGcGUCGGccgcgggccgcGCGGGGACGGugcUGGCCg -3'
miRNA:   3'- -UCCuCAGCC-----------CGUCUUUGUCua-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.