miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 100985 0.66 0.93869
Target:  5'- cGGGGGcgUGGGCGGGGAgGGGgaggaaGGCg -3'
miRNA:   3'- -UCCUCa-GCCCGUCUUUgUCUag----CCGg -5'
5151 5' -54.8 NC_001798.1 + 113478 0.66 0.93869
Target:  5'- uGGGGGUUGuGCGuGAucaugGGCGGcgCGGCCc -3'
miRNA:   3'- -UCCUCAGCcCGU-CU-----UUGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 144317 0.66 0.93869
Target:  5'- cGGaAGUC-GGCAGggGCGGcGUCGcaucGCCc -3'
miRNA:   3'- uCC-UCAGcCCGUCuuUGUC-UAGC----CGG- -5'
5151 5' -54.8 NC_001798.1 + 67609 0.66 0.937245
Target:  5'- cGGAGaccgcgcuccggcgaGGGCGGAugcGGCAGGgcggUUGGCCa -3'
miRNA:   3'- uCCUCag-------------CCCGUCU---UUGUCU----AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 36039 0.66 0.933789
Target:  5'- gGGGGGUgGcGGCGGu----GGUCGGCg -3'
miRNA:   3'- -UCCUCAgC-CCGUCuuuguCUAGCCGg -5'
5151 5' -54.8 NC_001798.1 + 83570 0.66 0.933789
Target:  5'- uGGuGcUgGGGCGGugaaacuGCGGggCGGCCa -3'
miRNA:   3'- uCCuC-AgCCCGUCuu-----UGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 146285 0.66 0.933789
Target:  5'- cGGAGaggcCGaGCGGGGAguGggCGGCCg -3'
miRNA:   3'- uCCUCa---GCcCGUCUUUguCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 111278 0.66 0.933789
Target:  5'- cGGuucGUCGGGCgcGGGAACGuacaGGCCg -3'
miRNA:   3'- uCCu--CAGCCCG--UCUUUGUcuagCCGG- -5'
5151 5' -54.8 NC_001798.1 + 153810 0.66 0.928647
Target:  5'- gGGGGG-CaGGCGGcgGCAGGcgCGGCg -3'
miRNA:   3'- -UCCUCaGcCCGUCuuUGUCUa-GCCGg -5'
5151 5' -54.8 NC_001798.1 + 4577 0.66 0.928647
Target:  5'- aGGGGGUcCGcGGCGGAGAaggcGAgcgGGCCg -3'
miRNA:   3'- -UCCUCA-GC-CCGUCUUUgu--CUag-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 73947 0.66 0.928647
Target:  5'- uGGAGggGGGCgAGuGGACGcGcgCGGCCg -3'
miRNA:   3'- uCCUCagCCCG-UC-UUUGU-CuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 105610 0.66 0.92812
Target:  5'- gAGGGcggCGGGCGGGcgacGACGGcgcuccgggaagaAUUGGCCg -3'
miRNA:   3'- -UCCUca-GCCCGUCU----UUGUC-------------UAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 56404 0.67 0.923264
Target:  5'- uGGGGUCccgcGGCGGggGCuGGU-GGCUg -3'
miRNA:   3'- uCCUCAGc---CCGUCuuUGuCUAgCCGG- -5'
5151 5' -54.8 NC_001798.1 + 15261 0.67 0.923264
Target:  5'- gGGGGGUaCGGGCGGugcccCGGGUUccgGGCg -3'
miRNA:   3'- -UCCUCA-GCCCGUCuuu--GUCUAG---CCGg -5'
5151 5' -54.8 NC_001798.1 + 130085 0.67 0.919353
Target:  5'- cGGcGUCGGGCAcaggcccGggGCguugcacucgggcguAGAgcUCGGCCu -3'
miRNA:   3'- uCCuCAGCCCGU-------CuuUG---------------UCU--AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 6311 0.67 0.917641
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGcCGGg- -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 51474 0.67 0.917641
Target:  5'- cGGGccgcguGUCGGGCccGGAGcuGCAGG-CGGCa -3'
miRNA:   3'- -UCCu-----CAGCCCG--UCUU--UGUCUaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 97530 0.67 0.917641
Target:  5'- gAGGAGgggGGGCGGAGGCguGGcgCGGg- -3'
miRNA:   3'- -UCCUCag-CCCGUCUUUG--UCuaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 28829 0.67 0.917641
Target:  5'- cGGGccGUCGGGCGGucuaggguuGAACcggcgAGggCGGCCu -3'
miRNA:   3'- -UCCu-CAGCCCGUC---------UUUG-----UCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 6620 0.67 0.917641
Target:  5'- gGGGGGaCGGGCcggGGGGACGG---GGCCc -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCuagCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.