miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 40511 0.74 0.568243
Target:  5'- cGGGGGagGGGCAagcagacccGAGGcCGGAUCGGCUc -3'
miRNA:   3'- -UCCUCagCCCGU---------CUUU-GUCUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 27553 0.74 0.568243
Target:  5'- gGGGGGagGGGCGGcgcccGCGGGggagCGGCCg -3'
miRNA:   3'- -UCCUCagCCCGUCuu---UGUCUa---GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 111405 0.74 0.588584
Target:  5'- -uGGGUCGGGCucAGGGcCAGcgCGGCCc -3'
miRNA:   3'- ucCUCAGCCCG--UCUUuGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 147910 0.73 0.609053
Target:  5'- cGGGG--GGGCAGgcGCGGGUCgGGCCc -3'
miRNA:   3'- uCCUCagCCCGUCuuUGUCUAG-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 36506 0.73 0.609053
Target:  5'- cGGGcGGcCGGGCGGggGCGcgcggCGGCCg -3'
miRNA:   3'- -UCC-UCaGCCCGUCuuUGUcua--GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 6240 0.73 0.619317
Target:  5'- gGGGGGaCGGGCGGggGaCGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCGUCuuU-GUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 11362 0.72 0.650136
Target:  5'- gGGGGGUguuUGGGUGGGAucGCAGcUCGGCUc -3'
miRNA:   3'- -UCCUCA---GCCCGUCUU--UGUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 4419 0.72 0.650136
Target:  5'- cGGGGGUCGcGGCG---ACAGGcUGGCCa -3'
miRNA:   3'- -UCCUCAGC-CCGUcuuUGUCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 61165 0.72 0.660392
Target:  5'- aGGGGGagGGGgGGAAGagagagauGGUCGGCCu -3'
miRNA:   3'- -UCCUCagCCCgUCUUUgu------CUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 102482 0.72 0.680825
Target:  5'- gAGGAGgCGGGUagugcGGGGACGGGcCGGCg -3'
miRNA:   3'- -UCCUCaGCCCG-----UCUUUGUCUaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 72157 0.72 0.690986
Target:  5'- cGGcGUCGGGCccacGAuGCAGAU-GGCCg -3'
miRNA:   3'- uCCuCAGCCCGu---CUuUGUCUAgCCGG- -5'
5151 5' -54.8 NC_001798.1 + 17974 0.72 0.690986
Target:  5'- cGGAcGUCGGG-GGggGCuGcgCGGCCc -3'
miRNA:   3'- uCCU-CAGCCCgUCuuUGuCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 36549 0.72 0.701097
Target:  5'- cGGcGGcCGGGCGGggGCGcgcggCGGCCg -3'
miRNA:   3'- uCC-UCaGCCCGUCuuUGUcua--GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 36591 0.72 0.701097
Target:  5'- cGGcGGcCGGGCGGggGCGcgcggCGGCCg -3'
miRNA:   3'- uCC-UCaGCCCGUCuuUGUcua--GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 102064 0.71 0.711149
Target:  5'- uGGGGGUgGuGGUAGGgccccaccGGCGGAUaCGGCCc -3'
miRNA:   3'- -UCCUCAgC-CCGUCU--------UUGUCUA-GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 6536 0.71 0.711149
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 6578 0.71 0.711149
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 33493 0.71 0.740863
Target:  5'- gGGGAaaGUgGGGCGGggGCgAGggCGGUUg -3'
miRNA:   3'- -UCCU--CAgCCCGUCuuUG-UCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 137483 0.71 0.740863
Target:  5'- gGGGAGggGGGCcGggGCAGAgccgCGuGCUg -3'
miRNA:   3'- -UCCUCagCCCGuCuuUGUCUa---GC-CGG- -5'
5151 5' -54.8 NC_001798.1 + 6363 0.71 0.750589
Target:  5'- gGGGGGaCGGGCcgGGggGCcGGggGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG--UCuuUGuCUagCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.