miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 11180 0.68 0.892763
Target:  5'- gGGGcGGUgGGGCGGGccuGCcGAaCGGCCc -3'
miRNA:   3'- -UCC-UCAgCCCGUCUu--UGuCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 11362 0.72 0.650136
Target:  5'- gGGGGGUguuUGGGUGGGAucGCAGcUCGGCUc -3'
miRNA:   3'- -UCCUCA---GCCCGUCUU--UGUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 11665 0.68 0.878931
Target:  5'- cGGGGGUCGGGUcucGGggGgAGGaCGGg- -3'
miRNA:   3'- -UCCUCAGCCCG---UCuuUgUCUaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 14982 0.67 0.905675
Target:  5'- cGGGAGcUUGGGCGGggGggcgaggcguguUGGGggcgagCGGCCc -3'
miRNA:   3'- -UCCUC-AGCCCGUCuuU------------GUCUa-----GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 15261 0.67 0.923264
Target:  5'- gGGGGGUaCGGGCGGugcccCGGGUUccgGGCg -3'
miRNA:   3'- -UCCUCA-GCCCGUCuuu--GUCUAG---CCGg -5'
5151 5' -54.8 NC_001798.1 + 15349 0.69 0.823845
Target:  5'- gGGGGG-CGaGGCGGuGAgGGGggaaUCGGCCg -3'
miRNA:   3'- -UCCUCaGC-CCGUCuUUgUCU----AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 15459 0.7 0.806416
Target:  5'- gGGGGGUCgcguGGGUAGAcgugGGCGGGggGGUCg -3'
miRNA:   3'- -UCCUCAG----CCCGUCU----UUGUCUagCCGG- -5'
5151 5' -54.8 NC_001798.1 + 15687 0.67 0.899336
Target:  5'- gGGGAGUagUGGuuGCGGggGCGG-UCGGUUc -3'
miRNA:   3'- -UCCUCA--GCC--CGUCuuUGUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 17974 0.72 0.690986
Target:  5'- cGGAcGUCGGG-GGggGCuGcgCGGCCc -3'
miRNA:   3'- uCCU-CAGCCCgUCuuUGuCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 18005 0.69 0.841389
Target:  5'- cAGGAGgauggccgcuggcucCGGGCAGG---GGggCGGCCg -3'
miRNA:   3'- -UCCUCa--------------GCCCGUCUuugUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 19856 0.68 0.892763
Target:  5'- cGGGG-CGGGUAGGc-CAGAgcguUCGGCg -3'
miRNA:   3'- uCCUCaGCCCGUCUuuGUCU----AGCCGg -5'
5151 5' -54.8 NC_001798.1 + 23557 0.66 0.943352
Target:  5'- cGGGGGUgcccgcgaGGGCcccGGggGCGGcgcccCGGCCg -3'
miRNA:   3'- -UCCUCAg-------CCCG---UCuuUGUCua---GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 26484 0.68 0.88596
Target:  5'- uGGGcGUCGGccgcgggccgcGCGGGGACGGugcUGGCCg -3'
miRNA:   3'- -UCCuCAGCC-----------CGUCUUUGUCua-GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 26677 0.66 0.951967
Target:  5'- gGGGAGaUGGGgAGAGGgGGAaggaaUCGGgCg -3'
miRNA:   3'- -UCCUCaGCCCgUCUUUgUCU-----AGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26807 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26837 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26867 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26897 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26927 0.8 0.270901
Target:  5'- cGGGGGUCGGGCGGGcg-GGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUuugUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26956 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.