miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 2266 0.69 0.8323
Target:  5'- cGGGGGgcgGGGCGGc-GCAGcgcgCGGCCa -3'
miRNA:   3'- -UCCUCag-CCCGUCuuUGUCua--GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 2344 0.67 0.917641
Target:  5'- cGGGGaagagCGGGUGGuccGugAGcUCGGCCa -3'
miRNA:   3'- uCCUCa----GCCCGUCu--UugUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 2696 0.77 0.415603
Target:  5'- gAGcGAGUCGGccGCGGcGACGGuGUCGGCCa -3'
miRNA:   3'- -UC-CUCAGCC--CGUCuUUGUC-UAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 3195 0.66 0.951967
Target:  5'- cGGccccGGcCGGcGCGGAGGCGGGcgCGGCg -3'
miRNA:   3'- uCC----UCaGCC-CGUCUUUGUCUa-GCCGg -5'
5151 5' -54.8 NC_001798.1 + 4088 0.83 0.187627
Target:  5'- cGGGGGUcCGGGCcGggGCGGGcUCGGCCc -3'
miRNA:   3'- -UCCUCA-GCCCGuCuuUGUCU-AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 4419 0.72 0.650136
Target:  5'- cGGGGGUCGcGGCG---ACAGGcUGGCCa -3'
miRNA:   3'- -UCCUCAGC-CCGUcuuUGUCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 4577 0.66 0.928647
Target:  5'- aGGGGGUcCGcGGCGGAGAaggcGAgcgGGCCg -3'
miRNA:   3'- -UCCUCA-GC-CCGUCUUUgu--CUag-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 4863 0.68 0.856535
Target:  5'- cGGGuUCGGGguGGgcGGCGGuccGUCGGCUg -3'
miRNA:   3'- uCCUcAGCCCguCU--UUGUC---UAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 5274 0.66 0.93869
Target:  5'- gAGGAGgacgCGGaGgAGGAGC-GAUCGacGCCg -3'
miRNA:   3'- -UCCUCa---GCC-CgUCUUUGuCUAGC--CGG- -5'
5151 5' -54.8 NC_001798.1 + 6240 0.73 0.619317
Target:  5'- gGGGGGaCGGGCGGggGaCGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCGUCuuU-GUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 6272 0.67 0.917641
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGcCGGg- -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 6311 0.67 0.917641
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGcCGGg- -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUaGCCgg -5'
5151 5' -54.8 NC_001798.1 + 6363 0.71 0.750589
Target:  5'- gGGGGGaCGGGCcgGGggGCcGGggGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG--UCuuUGuCUagCCGG- -5'
5151 5' -54.8 NC_001798.1 + 6536 0.71 0.711149
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 6578 0.71 0.711149
Target:  5'- gGGGGGaCGGGCcggGGGGACGGGgggacgGGCCg -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCUag----CCGG- -5'
5151 5' -54.8 NC_001798.1 + 6620 0.67 0.917641
Target:  5'- gGGGGGaCGGGCcggGGGGACGG---GGCCc -3'
miRNA:   3'- -UCCUCaGCCCG---UCUUUGUCuagCCGG- -5'
5151 5' -54.8 NC_001798.1 + 10316 0.68 0.864213
Target:  5'- gGGGGGUUGGGgGGGGaacGCuGAcCGGCg -3'
miRNA:   3'- -UCCUCAGCCCgUCUU---UGuCUaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 10387 0.66 0.947345
Target:  5'- cGGGGGUCGGGgucggcaCAGggGCGGGcuccaCGaCCa -3'
miRNA:   3'- -UCCUCAGCCC-------GUCuuUGUCUa----GCcGG- -5'
5151 5' -54.8 NC_001798.1 + 10905 0.68 0.871681
Target:  5'- cAGGAGcCGucGGUcGggGCAGAUCGGa- -3'
miRNA:   3'- -UCCUCaGC--CCGuCuuUGUCUAGCCgg -5'
5151 5' -54.8 NC_001798.1 + 10972 0.68 0.892763
Target:  5'- -aGAGUCGGGCGGcGACuccuuaaauGcgCGGCg -3'
miRNA:   3'- ucCUCAGCCCGUCuUUGu--------CuaGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.