miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 153810 0.66 0.928647
Target:  5'- gGGGGG-CaGGCGGcgGCAGGcgCGGCg -3'
miRNA:   3'- -UCCUCaGcCCGUCuuUGUCUa-GCCGg -5'
5151 5' -54.8 NC_001798.1 + 153759 0.68 0.878931
Target:  5'- --aGGUgGGGCGGAAGgGGGcgcugCGGCCc -3'
miRNA:   3'- uccUCAgCCCGUCUUUgUCUa----GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 153637 0.67 0.899336
Target:  5'- aGGGGGUCGGaGgGGAGGCGuaccuucccGcgCGGCg -3'
miRNA:   3'- -UCCUCAGCC-CgUCUUUGU---------CuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 153426 0.66 0.943352
Target:  5'- cAGGAcccccGUCGGGcCAGgcGCg---CGGCCg -3'
miRNA:   3'- -UCCU-----CAGCCC-GUCuuUGucuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 153072 0.77 0.433365
Target:  5'- uGGGG-CGGGCGGAGcgGCGGggCGGCg -3'
miRNA:   3'- uCCUCaGCCCGUCUU--UGUCuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 153024 0.68 0.864213
Target:  5'- cGGAGUcCGGGCccgcgcGGcgGCGcgcGGUUGGCCg -3'
miRNA:   3'- uCCUCA-GCCCG------UCuuUGU---CUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 152297 0.68 0.878931
Target:  5'- cGGGGUaGGGUAGAcucgaGACGG--CGGCCc -3'
miRNA:   3'- uCCUCAgCCCGUCU-----UUGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 151614 0.7 0.779099
Target:  5'- cGGGGGcCGGGcCGGggGCG---UGGCCg -3'
miRNA:   3'- -UCCUCaGCCC-GUCuuUGUcuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 149402 0.7 0.797458
Target:  5'- gGGGGcGUCGGGUAGu--CGGGg-GGCCu -3'
miRNA:   3'- -UCCU-CAGCCCGUCuuuGUCUagCCGG- -5'
5151 5' -54.8 NC_001798.1 + 148380 0.67 0.911777
Target:  5'- gAGGAGgggCGGGCGuGGcgGGCAGGUgugCGGgCg -3'
miRNA:   3'- -UCCUCa--GCCCGU-CU--UUGUCUA---GCCgG- -5'
5151 5' -54.8 NC_001798.1 + 148295 0.68 0.871681
Target:  5'- cAGGuGUgCGGGCGGGGugGGGUgagugCGGUUg -3'
miRNA:   3'- -UCCuCA-GCCCGUCUUugUCUA-----GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 147910 0.73 0.609053
Target:  5'- cGGGG--GGGCAGgcGCGGGUCgGGCCc -3'
miRNA:   3'- uCCUCagCCCGUCuuUGUCUAG-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 147704 0.75 0.488198
Target:  5'- gGGGGGUCccagaaaGGGCAG--GCAGGUCaGCCg -3'
miRNA:   3'- -UCCUCAG-------CCCGUCuuUGUCUAGcCGG- -5'
5151 5' -54.8 NC_001798.1 + 147625 0.66 0.943352
Target:  5'- gGGGGGgggCGGGCGGAAgagagaagagaGCAGGggUUGGg- -3'
miRNA:   3'- -UCCUCa--GCCCGUCUU-----------UGUCU--AGCCgg -5'
5151 5' -54.8 NC_001798.1 + 147011 0.66 0.951967
Target:  5'- cGGGGaccccCGGGCGGGc-CGGGgcUUGGCCg -3'
miRNA:   3'- uCCUCa----GCCCGUCUuuGUCU--AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 146422 0.75 0.522224
Target:  5'- gGGcGAGcCGGGCAGAGuGCGGAgcccccggagcccgCGGCCg -3'
miRNA:   3'- -UC-CUCaGCCCGUCUU-UGUCUa-------------GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 146285 0.66 0.933789
Target:  5'- cGGAGaggcCGaGCGGGGAguGggCGGCCg -3'
miRNA:   3'- uCCUCa---GCcCGUCUUUguCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 146081 0.7 0.78835
Target:  5'- gAGGGGUCcgGGGC-GAGGCGGG-CGGgCg -3'
miRNA:   3'- -UCCUCAG--CCCGuCUUUGUCUaGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 145796 0.68 0.871681
Target:  5'- cAGGAGcgcgCGGGCggcAGAAACgcgGGcgCGGCg -3'
miRNA:   3'- -UCCUCa---GCCCG---UCUUUG---UCuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 144317 0.66 0.93869
Target:  5'- cGGaAGUC-GGCAGggGCGGcGUCGcaucGCCc -3'
miRNA:   3'- uCC-UCAGcCCGUCuuUGUC-UAGC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.