miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 10387 0.66 0.947345
Target:  5'- cGGGGGUCGGGgucggcaCAGggGCGGGcuccaCGaCCa -3'
miRNA:   3'- -UCCUCAGCCC-------GUCuuUGUCUa----GCcGG- -5'
5151 5' -54.8 NC_001798.1 + 120684 1.13 0.002248
Target:  5'- aAGGAGUCGGGCAGAAACAGAUCGGCCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUUUGUCUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 113478 0.66 0.93869
Target:  5'- uGGGGGUUGuGCGuGAucaugGGCGGcgCGGCCc -3'
miRNA:   3'- -UCCUCAGCcCGU-CU-----UUGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 144317 0.66 0.93869
Target:  5'- cGGaAGUC-GGCAGggGCGGcGUCGcaucGCCc -3'
miRNA:   3'- uCC-UCAGcCCGUCuuUGUC-UAGC----CGG- -5'
5151 5' -54.8 NC_001798.1 + 23557 0.66 0.943352
Target:  5'- cGGGGGUgcccgcgaGGGCcccGGggGCGGcgcccCGGCCg -3'
miRNA:   3'- -UCCUCAg-------CCCG---UCuuUGUCua---GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 70307 0.66 0.943352
Target:  5'- ---uGUCGGGCGc-GGCGG-UCGGCCc -3'
miRNA:   3'- uccuCAGCCCGUcuUUGUCuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 30157 0.66 0.943352
Target:  5'- gGGGGGcCGGGguGAGggagggacACGGGggacaCGGCg -3'
miRNA:   3'- -UCCUCaGCCCguCUU--------UGUCUa----GCCGg -5'
5151 5' -54.8 NC_001798.1 + 102217 0.66 0.943352
Target:  5'- cGGGAGUcgacCGGGCGcGGcuCGGggCgGGCCu -3'
miRNA:   3'- -UCCUCA----GCCCGU-CUuuGUCuaG-CCGG- -5'
5151 5' -54.8 NC_001798.1 + 120209 0.66 0.943352
Target:  5'- gAGGAGcUCGGGCcccGGGCc-GUUGGCCc -3'
miRNA:   3'- -UCCUC-AGCCCGuc-UUUGucUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 147625 0.66 0.943352
Target:  5'- gGGGGGgggCGGGCGGAAgagagaagagaGCAGGggUUGGg- -3'
miRNA:   3'- -UCCUCa--GCCCGUCUU-----------UGUCU--AGCCgg -5'
5151 5' -54.8 NC_001798.1 + 153426 0.66 0.943352
Target:  5'- cAGGAcccccGUCGGGcCAGgcGCg---CGGCCg -3'
miRNA:   3'- -UCCU-----CAGCCC-GUCuuUGucuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 26677 0.66 0.951967
Target:  5'- gGGGAGaUGGGgAGAGGgGGAaggaaUCGGgCg -3'
miRNA:   3'- -UCCUCaGCCCgUCUUUgUCU-----AGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 80526 0.66 0.947777
Target:  5'- uGGAGUCuGGcCAGAcGC---UCGGCCc -3'
miRNA:   3'- uCCUCAGcCC-GUCUuUGucuAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 85286 0.66 0.947777
Target:  5'- cGGGG--GGGCGGggGCcgGGGUCcGCCc -3'
miRNA:   3'- uCCUCagCCCGUCuuUG--UCUAGcCGG- -5'
5151 5' -54.8 NC_001798.1 + 29310 0.66 0.947777
Target:  5'- ---cGcCGGGUGGGugGGCuGAUCGGCCc -3'
miRNA:   3'- uccuCaGCCCGUCU--UUGuCUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 69802 0.66 0.947777
Target:  5'- aGGGccuGUUGGGCcgccccACGGAaCGGCCg -3'
miRNA:   3'- -UCCu--CAGCCCGucuu--UGUCUaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 112774 0.66 0.947777
Target:  5'- cGGGGa-GGGCGGAcgcACGGAUgugCGGCUc -3'
miRNA:   3'- uCCUCagCCCGUCUu--UGUCUA---GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 95665 0.66 0.950734
Target:  5'- cGGcGUCGuucggcgguuuggcGGCGGcgGCGGGggCGGCCg -3'
miRNA:   3'- uCCuCAGC--------------CCGUCuuUGUCUa-GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 95569 0.66 0.951967
Target:  5'- uGGAGguggcccaCGaGGCGGAGGCccuGGUCaGCCa -3'
miRNA:   3'- uCCUCa-------GC-CCGUCUUUGu--CUAGcCGG- -5'
5151 5' -54.8 NC_001798.1 + 147011 0.66 0.951967
Target:  5'- cGGGGaccccCGGGCGGGc-CGGGgcUUGGCCg -3'
miRNA:   3'- uCCUCa----GCCCGUCUuuGUCU--AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.