miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5151 5' -54.8 NC_001798.1 + 120684 1.13 0.002248
Target:  5'- aAGGAGUCGGGCAGAAACAGAUCGGCCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUUUGUCUAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 27016 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26807 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26837 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26956 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26867 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26897 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26986 0.85 0.153108
Target:  5'- cGGGGGUCGGGCGGgcGgGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCuuUgUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 4088 0.83 0.187627
Target:  5'- cGGGGGUcCGGGCcGggGCGGGcUCGGCCc -3'
miRNA:   3'- -UCCUCA-GCCCGuCuuUGUCU-AGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 34735 0.83 0.187627
Target:  5'- gAGG-GUCGGGCccGGGAGCGGggCGGCCc -3'
miRNA:   3'- -UCCuCAGCCCG--UCUUUGUCuaGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 31029 0.81 0.245542
Target:  5'- cGGGGGUCGGGCGGGggUcgggcggGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUuuG-------UCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 30996 0.81 0.245542
Target:  5'- cGGGGGUCGGGCGGGggUcgggcggGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUuuG-------UCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 30963 0.81 0.245542
Target:  5'- cGGGGGUCGGGCGGGggUcgggcggGGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUuuG-------UCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 26927 0.8 0.270901
Target:  5'- cGGGGGUCGGGCGGGcg-GGGUCGGgCg -3'
miRNA:   3'- -UCCUCAGCCCGUCUuugUCUAGCCgG- -5'
5151 5' -54.8 NC_001798.1 + 2696 0.77 0.415603
Target:  5'- gAGcGAGUCGGccGCGGcGACGGuGUCGGCCa -3'
miRNA:   3'- -UC-CUCAGCC--CGUCuUUGUC-UAGCCGG- -5'
5151 5' -54.8 NC_001798.1 + 153072 0.77 0.433365
Target:  5'- uGGGG-CGGGCGGAGcgGCGGggCGGCg -3'
miRNA:   3'- uCCUCaGCCCGUCUU--UGUCuaGCCGg -5'
5151 5' -54.8 NC_001798.1 + 147704 0.75 0.488198
Target:  5'- gGGGGGUCccagaaaGGGCAG--GCAGGUCaGCCg -3'
miRNA:   3'- -UCCUCAG-------CCCGUCuuUGUCUAGcCGG- -5'
5151 5' -54.8 NC_001798.1 + 32957 0.75 0.518287
Target:  5'- uGGGAGUgGGGgGGGggGACGGAcaCGGCCc -3'
miRNA:   3'- -UCCUCAgCCCgUCU--UUGUCUa-GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 146422 0.75 0.522224
Target:  5'- gGGcGAGcCGGGCAGAGuGCGGAgcccccggagcccgCGGCCg -3'
miRNA:   3'- -UC-CUCaGCCCGUCUU-UGUCUa-------------GCCGG- -5'
5151 5' -54.8 NC_001798.1 + 121788 0.75 0.538085
Target:  5'- cGGucUCGGGCGGGGcCGGGcCGGCCg -3'
miRNA:   3'- uCCucAGCCCGUCUUuGUCUaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.