Results 21 - 40 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5151 | 5' | -54.8 | NC_001798.1 | + | 95569 | 0.66 | 0.951967 |
Target: 5'- uGGAGguggcccaCGaGGCGGAGGCccuGGUCaGCCa -3' miRNA: 3'- uCCUCa-------GC-CCGUCUUUGu--CUAGcCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 95665 | 0.66 | 0.950734 |
Target: 5'- cGGcGUCGuucggcgguuuggcGGCGGcgGCGGGggCGGCCg -3' miRNA: 3'- uCCuCAGC--------------CCGUCuuUGUCUa-GCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 112774 | 0.66 | 0.947777 |
Target: 5'- cGGGGa-GGGCGGAcgcACGGAUgugCGGCUc -3' miRNA: 3'- uCCUCagCCCGUCUu--UGUCUA---GCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 69802 | 0.66 | 0.947777 |
Target: 5'- aGGGccuGUUGGGCcgccccACGGAaCGGCCg -3' miRNA: 3'- -UCCu--CAGCCCGucuu--UGUCUaGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 29310 | 0.66 | 0.947777 |
Target: 5'- ---cGcCGGGUGGGugGGCuGAUCGGCCc -3' miRNA: 3'- uccuCaGCCCGUCU--UUGuCUAGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 85286 | 0.66 | 0.947777 |
Target: 5'- cGGGG--GGGCGGggGCcgGGGUCcGCCc -3' miRNA: 3'- uCCUCagCCCGUCuuUG--UCUAGcCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 102217 | 0.66 | 0.943352 |
Target: 5'- cGGGAGUcgacCGGGCGcGGcuCGGggCgGGCCu -3' miRNA: 3'- -UCCUCA----GCCCGU-CUuuGUCuaG-CCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 120209 | 0.66 | 0.943352 |
Target: 5'- gAGGAGcUCGGGCcccGGGCc-GUUGGCCc -3' miRNA: 3'- -UCCUC-AGCCCGuc-UUUGucUAGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 147625 | 0.66 | 0.943352 |
Target: 5'- gGGGGGgggCGGGCGGAAgagagaagagaGCAGGggUUGGg- -3' miRNA: 3'- -UCCUCa--GCCCGUCUU-----------UGUCU--AGCCgg -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 153426 | 0.66 | 0.943352 |
Target: 5'- cAGGAcccccGUCGGGcCAGgcGCg---CGGCCg -3' miRNA: 3'- -UCCU-----CAGCCC-GUCuuUGucuaGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 10387 | 0.66 | 0.947345 |
Target: 5'- cGGGGGUCGGGgucggcaCAGggGCGGGcuccaCGaCCa -3' miRNA: 3'- -UCCUCAGCCC-------GUCuuUGUCUa----GCcGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 80526 | 0.66 | 0.947777 |
Target: 5'- uGGAGUCuGGcCAGAcGC---UCGGCCc -3' miRNA: 3'- uCCUCAGcCC-GUCUuUGucuAGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 6620 | 0.67 | 0.917641 |
Target: 5'- gGGGGGaCGGGCcggGGGGACGG---GGCCc -3' miRNA: 3'- -UCCUCaGCCCG---UCUUUGUCuagCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 28829 | 0.67 | 0.917641 |
Target: 5'- cGGGccGUCGGGCGGucuaggguuGAACcggcgAGggCGGCCu -3' miRNA: 3'- -UCCu-CAGCCCGUC---------UUUG-----UCuaGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 97530 | 0.67 | 0.917641 |
Target: 5'- gAGGAGgggGGGCGGAGGCguGGcgCGGg- -3' miRNA: 3'- -UCCUCag-CCCGUCUUUG--UCuaGCCgg -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 51474 | 0.67 | 0.917641 |
Target: 5'- cGGGccgcguGUCGGGCccGGAGcuGCAGG-CGGCa -3' miRNA: 3'- -UCCu-----CAGCCCG--UCUU--UGUCUaGCCGg -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 75885 | 0.67 | 0.917641 |
Target: 5'- -cGGGUCGaGGCGGAGGCccgcgAGAUgcgcgaGGCCu -3' miRNA: 3'- ucCUCAGC-CCGUCUUUG-----UCUAg-----CCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 130085 | 0.67 | 0.919353 |
Target: 5'- cGGcGUCGGGCAcaggcccGggGCguugcacucgggcguAGAgcUCGGCCu -3' miRNA: 3'- uCCuCAGCCCGU-------CuuUG---------------UCU--AGCCGG- -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 15261 | 0.67 | 0.923264 |
Target: 5'- gGGGGGUaCGGGCGGugcccCGGGUUccgGGCg -3' miRNA: 3'- -UCCUCA-GCCCGUCuuu--GUCUAG---CCGg -5' |
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5151 | 5' | -54.8 | NC_001798.1 | + | 6311 | 0.67 | 0.917641 |
Target: 5'- gGGGGGaCGGGCcggGGGGACGGGcCGGg- -3' miRNA: 3'- -UCCUCaGCCCG---UCUUUGUCUaGCCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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