miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 36599 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36620 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 38610 0.68 0.546479
Target:  5'- uUGCCgugcacauauaaGGGGGCGauaGUGUGacUGGCCGUc -3'
miRNA:   3'- -ACGG------------CCUCCGCg--CGCACa-ACCGGCAc -5'
5152 3' -62 NC_001798.1 + 39460 0.68 0.508561
Target:  5'- cGCCaucagcggaggGGGGGCcugGCGCGUGccucgUGGCCGc- -3'
miRNA:   3'- aCGG-----------CCUCCG---CGCGCACa----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 39810 0.67 0.575496
Target:  5'- cGCCGGuGGuCGCGgGUGgcGGaUCGUc -3'
miRNA:   3'- aCGGCCuCC-GCGCgCACaaCC-GGCAc -5'
5152 3' -62 NC_001798.1 + 40143 0.68 0.546479
Target:  5'- gGCgGGuguccuccgaGGGgGCGCGUGUcggaagagagUGGCCGg- -3'
miRNA:   3'- aCGgCC----------UCCgCGCGCACA----------ACCGGCac -5'
5152 3' -62 NC_001798.1 + 42760 0.67 0.595037
Target:  5'- aGaCGGGcGGCGCGCGg---GGCCGa- -3'
miRNA:   3'- aCgGCCU-CCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 43264 0.7 0.426972
Target:  5'- cGCCGGGGGCGuCGUgcccugcugcuccGUGgcGGCCa-- -3'
miRNA:   3'- aCGGCCUCCGC-GCG-------------CACaaCCGGcac -5'
5152 3' -62 NC_001798.1 + 43474 0.73 0.285178
Target:  5'- cG-CGGGGGCGgGCGUGagGGCCGc- -3'
miRNA:   3'- aCgGCCUCCGCgCGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 50948 0.67 0.57355
Target:  5'- cGCCGGAGGCGCGCcuccacccGGUCc-- -3'
miRNA:   3'- aCGGCCUCCGCGCGcacaa---CCGGcac -5'
5152 3' -62 NC_001798.1 + 52037 0.67 0.608779
Target:  5'- gGcCCGGGGuGCGCGCGcuccuggggcgcgacUGUcgcgUGGCCGc- -3'
miRNA:   3'- aC-GGCCUC-CGCGCGC---------------ACA----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 52586 0.67 0.604849
Target:  5'- cGgUGGucGCGUGCGUGgcccUGGCCGc- -3'
miRNA:   3'- aCgGCCucCGCGCGCACa---ACCGGCac -5'
5152 3' -62 NC_001798.1 + 52965 0.69 0.462817
Target:  5'- gUGuCCgGGAGGCGCGCGaccgGGCUGg- -3'
miRNA:   3'- -AC-GG-CCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 56760 0.67 0.55514
Target:  5'- aGCUGGcaggugaAGGUGCGCG-GggGGCCcUGg -3'
miRNA:   3'- aCGGCC-------UCCGCGCGCaCaaCCGGcAC- -5'
5152 3' -62 NC_001798.1 + 58998 0.66 0.638308
Target:  5'- cGCgGGGGGgGCGCGgaggaaccccaGGCCGg- -3'
miRNA:   3'- aCGgCCUCCgCGCGCacaa-------CCGGCac -5'
5152 3' -62 NC_001798.1 + 70328 0.69 0.462817
Target:  5'- cGgCGGAGGCGCggGCGUGcUGGCa--- -3'
miRNA:   3'- aCgGCCUCCGCG--CGCACaACCGgcac -5'
5152 3' -62 NC_001798.1 + 71052 0.69 0.480867
Target:  5'- cGCgaGGAGGUGCGCGUGUcGaCCGc- -3'
miRNA:   3'- aCGg-CCUCCGCGCGCACAaCcGGCac -5'
5152 3' -62 NC_001798.1 + 71122 0.66 0.622552
Target:  5'- cGCUGauGGCGCGCGUGcggacggacgcGGCCGUc -3'
miRNA:   3'- aCGGCcuCCGCGCGCACaa---------CCGGCAc -5'
5152 3' -62 NC_001798.1 + 72050 0.66 0.644215
Target:  5'- gUGCUGGccuGGGCGCGCGacUUcGGCC-UGg -3'
miRNA:   3'- -ACGGCC---UCCGCGCGCacAA-CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 77359 0.67 0.575496
Target:  5'- gGCCcuGGAGGCGCGgGg---GGCCa-- -3'
miRNA:   3'- aCGG--CCUCCGCGCgCacaaCCGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.