miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 25317 0.67 0.585251
Target:  5'- cGCCcuGGAGGCcuacuGCGCcccgcgGGCCGUGg -3'
miRNA:   3'- aCGG--CCUCCG-----CGCGcacaa-CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 25608 0.66 0.634369
Target:  5'- cGCCGGGGGCGgGCcccccccggaGUGguccGCCGa- -3'
miRNA:   3'- aCGGCCUCCGCgCG----------CACaac-CGGCac -5'
5152 3' -62 NC_001798.1 + 25944 0.69 0.44513
Target:  5'- cGCCGGcAGuGCGC-CGUGcgcUGGCCGg- -3'
miRNA:   3'- aCGGCC-UC-CGCGcGCACa--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 26020 0.78 0.126381
Target:  5'- gGCCGGGGGUcuucgcGCGCGUGgaGGCCGc- -3'
miRNA:   3'- aCGGCCUCCG------CGCGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 26492 0.67 0.565779
Target:  5'- gGCCGcGGGcCGCGCGgggacgGUgcUGGCCGc- -3'
miRNA:   3'- aCGGCcUCC-GCGCGCa-----CA--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 26525 0.66 0.634369
Target:  5'- gGCgGGcGGCG-GCGUGgaGGUgGUGg -3'
miRNA:   3'- aCGgCCuCCGCgCGCACaaCCGgCAC- -5'
5152 3' -62 NC_001798.1 + 27605 0.67 0.585251
Target:  5'- gGaaGGGGGCGCGCGg---GGCUGc- -3'
miRNA:   3'- aCggCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 28615 0.66 0.62846
Target:  5'- cGCCuGGcccgacggggguccuGGGCGCGCGaGcgGGCCGa- -3'
miRNA:   3'- aCGG-CC---------------UCCGCGCGCaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 28659 0.67 0.585251
Target:  5'- cGaCCGGuuccGGCGcCGCGUGgcggcGGCCGa- -3'
miRNA:   3'- aC-GGCCu---CCGC-GCGCACaa---CCGGCac -5'
5152 3' -62 NC_001798.1 + 29541 0.68 0.536906
Target:  5'- cGCCGG-GGCGCGCGgcuauUGggGGaauCGUa -3'
miRNA:   3'- aCGGCCuCCGCGCGC-----ACaaCCg--GCAc -5'
5152 3' -62 NC_001798.1 + 30539 0.66 0.634369
Target:  5'- ---gGGGGGCGaCGUGUGU--GCCGUGu -3'
miRNA:   3'- acggCCUCCGC-GCGCACAacCGGCAC- -5'
5152 3' -62 NC_001798.1 + 30950 0.67 0.585251
Target:  5'- gGCgGGGGGCGgGCGgg--GGUCGg- -3'
miRNA:   3'- aCGgCCUCCGCgCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 31341 0.68 0.546479
Target:  5'- gGCgGGGGGCGCGCGca--GGCgCGg- -3'
miRNA:   3'- aCGgCCUCCGCGCGCacaaCCG-GCac -5'
5152 3' -62 NC_001798.1 + 34084 0.7 0.427827
Target:  5'- uUGuuGGGGGggggugaccgGCGCGUGggGGCgGUGg -3'
miRNA:   3'- -ACggCCUCCg---------CGCGCACaaCCGgCAC- -5'
5152 3' -62 NC_001798.1 + 36065 0.69 0.453927
Target:  5'- cUGCCGGAGGCugcggGCGCGggguagguggGUgggcgGGUgGUGg -3'
miRNA:   3'- -ACGGCCUCCG-----CGCGCa---------CAa----CCGgCAC- -5'
5152 3' -62 NC_001798.1 + 36142 0.69 0.490019
Target:  5'- cGCCGGuGGgGCGCGgcGgcGGUCGg- -3'
miRNA:   3'- aCGGCCuCCgCGCGCa-CaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36515 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36536 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36557 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36578 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.