miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 1652 0.71 0.370549
Target:  5'- cGUCGGgguacAGGCGCGCGUGcgcGGCCu-- -3'
miRNA:   3'- aCGGCC-----UCCGCGCGCACaa-CCGGcac -5'
5152 3' -62 NC_001798.1 + 1985 0.73 0.287757
Target:  5'- cGUCGGGGGCGCG-GUccaguugcccgcccaGgcGGCCGUGg -3'
miRNA:   3'- aCGGCCUCCGCGCgCA---------------CaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 2224 0.69 0.462817
Target:  5'- gGCCcGAGGCGCGCagcg-GGCCGa- -3'
miRNA:   3'- aCGGcCUCCGCGCGcacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 2327 0.65 0.671713
Target:  5'- gGCCGGGcgccacGGCGCGgGgaagagcgggUGGuCCGUGa -3'
miRNA:   3'- aCGGCCU------CCGCGCgCaca-------ACC-GGCAC- -5'
5152 3' -62 NC_001798.1 + 2411 0.71 0.378406
Target:  5'- gGCCGaGGGCGCcgGCGUG-UGGCUGg- -3'
miRNA:   3'- aCGGCcUCCGCG--CGCACaACCGGCac -5'
5152 3' -62 NC_001798.1 + 2676 0.66 0.634369
Target:  5'- gGCgCGGAGGCggGCGCGgcgagcgaGUcGGCCGc- -3'
miRNA:   3'- aCG-GCCUCCG--CGCGCa-------CAaCCGGCac -5'
5152 3' -62 NC_001798.1 + 3009 0.66 0.624522
Target:  5'- gGCgCGGGGGCGCGgCG----GGCCGg- -3'
miRNA:   3'- aCG-GCCUCCGCGC-GCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 3267 0.68 0.546479
Target:  5'- aGCCGGcGGGCaccGCGCGcucGUcGGCCGg- -3'
miRNA:   3'- aCGGCC-UCCG---CGCGCa--CAaCCGGCac -5'
5152 3' -62 NC_001798.1 + 3963 0.66 0.638308
Target:  5'- cGCCGGAGGcCGCgucgGCGUccagcucgaccgccgGggccgcccGGCCGUGa -3'
miRNA:   3'- aCGGCCUCC-GCG----CGCA---------------Caa------CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 4364 0.72 0.311794
Target:  5'- gGCgGGGGGCGCGCcggcggcgGUGgUGGUgGUGg -3'
miRNA:   3'- aCGgCCUCCGCGCG--------CACaACCGgCAC- -5'
5152 3' -62 NC_001798.1 + 4416 0.69 0.490019
Target:  5'- cGCCGGGGGuCGCgGCGacagGcUGGCCaUGg -3'
miRNA:   3'- aCGGCCUCC-GCG-CGCa---CaACCGGcAC- -5'
5152 3' -62 NC_001798.1 + 6372 0.66 0.624522
Target:  5'- gGCCGGGGG-GC-CG-GggGGCCGg- -3'
miRNA:   3'- aCGGCCUCCgCGcGCaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 12707 0.69 0.471798
Target:  5'- uUGCUGGGGGCG-GCGg---GGgCGUGg -3'
miRNA:   3'- -ACGGCCUCCGCgCGCacaaCCgGCAC- -5'
5152 3' -62 NC_001798.1 + 15059 0.69 0.471798
Target:  5'- gGCCcGGGGCGCGCG-GggGGUgGUu -3'
miRNA:   3'- aCGGcCUCCGCGCGCaCaaCCGgCAc -5'
5152 3' -62 NC_001798.1 + 15346 0.68 0.534999
Target:  5'- aGCgGGGGGCGagGCG-GUgaggggggaaucGGCCGUGg -3'
miRNA:   3'- aCGgCCUCCGCg-CGCaCAa-----------CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 15456 0.67 0.55707
Target:  5'- gGCgGGGGGuCGCGUGgguagacgugggcggGggGGUCGUGg -3'
miRNA:   3'- aCGgCCUCC-GCGCGCa--------------CaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 23664 0.69 0.44513
Target:  5'- cGCCGGGccCGCGCGgcggUGGCCGg- -3'
miRNA:   3'- aCGGCCUccGCGCGCaca-ACCGGCac -5'
5152 3' -62 NC_001798.1 + 23816 0.66 0.643231
Target:  5'- gGCCGGccccccgcccccgGGGCGCGUGcUGUacggcgGGCUGg- -3'
miRNA:   3'- aCGGCC-------------UCCGCGCGC-ACAa-----CCGGCac -5'
5152 3' -62 NC_001798.1 + 24185 0.68 0.499252
Target:  5'- gGCUGGGgccuGGCGCaCGUGgcGGCCGc- -3'
miRNA:   3'- aCGGCCU----CCGCGcGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 24578 0.77 0.157953
Target:  5'- cGCgCGGAGGCGgGCcgcgUGGCCGUGg -3'
miRNA:   3'- aCG-GCCUCCGCgCGcacaACCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.