miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 154271 0.67 0.595037
Target:  5'- -cCCGGcuGGCGUGCGcagcccgGGCCGUGu -3'
miRNA:   3'- acGGCCu-CCGCGCGCacaa---CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 153820 0.67 0.585251
Target:  5'- cGgCGGcAGGCGCgGCGUGcggGGCCu-- -3'
miRNA:   3'- aCgGCC-UCCGCG-CGCACaa-CCGGcac -5'
5152 3' -62 NC_001798.1 + 153603 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153565 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153527 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153037 0.8 0.098214
Target:  5'- cGCgCGGcGGCGCGCG-GUUGGCCGg- -3'
miRNA:   3'- aCG-GCCuCCGCGCGCaCAACCGGCac -5'
5152 3' -62 NC_001798.1 + 151611 0.67 0.595037
Target:  5'- gGCCGGGGGcCGgGCcggGggcgUGGCCGc- -3'
miRNA:   3'- aCGGCCUCC-GCgCGca-Ca---ACCGGCac -5'
5152 3' -62 NC_001798.1 + 150468 0.66 0.654053
Target:  5'- cGCgCGGGGGCGCGCGgcgc-GCCc-- -3'
miRNA:   3'- aCG-GCCUCCGCGCGCacaacCGGcac -5'
5152 3' -62 NC_001798.1 + 150000 0.68 0.527393
Target:  5'- cGCCGG-GGCGaGCGgcccgUGGCCGc- -3'
miRNA:   3'- aCGGCCuCCGCgCGCaca--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 146756 0.69 0.453927
Target:  5'- cGCCGGAGagcccgagccccGCcCGCGUGUU-GCUGUGg -3'
miRNA:   3'- aCGGCCUC------------CGcGCGCACAAcCGGCAC- -5'
5152 3' -62 NC_001798.1 + 146028 0.67 0.585251
Target:  5'- aGCCa-AGGCGCG-GUGggGGgCGUGg -3'
miRNA:   3'- aCGGccUCCGCGCgCACaaCCgGCAC- -5'
5152 3' -62 NC_001798.1 + 143813 0.66 0.644215
Target:  5'- gGcCCGGGcGGCGCGCGgccagccGUUGGaCCa-- -3'
miRNA:   3'- aC-GGCCU-CCGCGCGCa------CAACC-GGcac -5'
5152 3' -62 NC_001798.1 + 140202 0.7 0.402636
Target:  5'- gGCCGGugcuGGUGUGCGUGggGucGCCGa- -3'
miRNA:   3'- aCGGCCu---CCGCGCGCACaaC--CGGCac -5'
5152 3' -62 NC_001798.1 + 139331 0.66 0.634369
Target:  5'- cGCCGGcgcccGCGCGCGcUGUgcGGCCaUGg -3'
miRNA:   3'- aCGGCCuc---CGCGCGC-ACAa-CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 135789 0.67 0.565779
Target:  5'- cGCCGGAGGagGC-CGUGUgcgcGGCCc-- -3'
miRNA:   3'- aCGGCCUCCg-CGcGCACAa---CCGGcac -5'
5152 3' -62 NC_001798.1 + 134454 0.69 0.453927
Target:  5'- cGCCGaGcaccccGGCGCGCG-GUUGG-CGUGg -3'
miRNA:   3'- aCGGC-Cu-----CCGCGCGCaCAACCgGCAC- -5'
5152 3' -62 NC_001798.1 + 133444 0.66 0.644215
Target:  5'- cUGUCGGAGGacgcgguuaaGCGCGU---GGCCGa- -3'
miRNA:   3'- -ACGGCCUCCg---------CGCGCAcaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 132210 0.77 0.161872
Target:  5'- aGCUGGAGGCGCGCc---UGGCCGg- -3'
miRNA:   3'- aCGGCCUCCGCGCGcacaACCGGCac -5'
5152 3' -62 NC_001798.1 + 130360 0.7 0.4347
Target:  5'- cGCCGGugauacagguAGGCGCGCGUGcaccgaagcacGGCCaUGg -3'
miRNA:   3'- aCGGCC----------UCCGCGCGCACaa---------CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 128246 0.66 0.638308
Target:  5'- cGCUGGAGGCGgccggcaugguggacCGCGggcucGGCCGg- -3'
miRNA:   3'- aCGGCCUCCGC---------------GCGCacaa-CCGGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.