miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 120498 1.08 0.00098
Target:  5'- gUGCCGGAGGCGCGCGUGUUGGCCGUGa -3'
miRNA:   3'- -ACGGCCUCCGCGCGCACAACCGGCAC- -5'
5152 3' -62 NC_001798.1 + 153037 0.8 0.098214
Target:  5'- cGCgCGGcGGCGCGCG-GUUGGCCGg- -3'
miRNA:   3'- aCG-GCCuCCGCGCGCaCAACCGGCac -5'
5152 3' -62 NC_001798.1 + 26020 0.78 0.126381
Target:  5'- gGCCGGGGGUcuucgcGCGCGUGgaGGCCGc- -3'
miRNA:   3'- aCGGCCUCCG------CGCGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 24578 0.77 0.157953
Target:  5'- cGCgCGGAGGCGgGCcgcgUGGCCGUGg -3'
miRNA:   3'- aCG-GCCUCCGCgCGcacaACCGGCAC- -5'
5152 3' -62 NC_001798.1 + 132210 0.77 0.161872
Target:  5'- aGCUGGAGGCGCGCc---UGGCCGg- -3'
miRNA:   3'- aCGGCCUCCGCGCGcacaACCGGCac -5'
5152 3' -62 NC_001798.1 + 36620 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36578 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36599 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36557 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36536 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 36515 0.74 0.242971
Target:  5'- gGgCGGGGGCGCGCGgc--GGCCGg- -3'
miRNA:   3'- aCgGCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 109448 0.73 0.272557
Target:  5'- gGCUGGAGGCGCGCcucgGgcaucuggUGGCCGc- -3'
miRNA:   3'- aCGGCCUCCGCGCGca--Ca-------ACCGGCac -5'
5152 3' -62 NC_001798.1 + 88750 0.73 0.272557
Target:  5'- gGaCCGGGGGCGCGCaUGccGGCCGc- -3'
miRNA:   3'- aC-GGCCUCCGCGCGcACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 43474 0.73 0.285178
Target:  5'- cG-CGGGGGCGgGCGUGagGGCCGc- -3'
miRNA:   3'- aCgGCCUCCGCgCGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 1985 0.73 0.287757
Target:  5'- cGUCGGGGGCGCG-GUccaguugcccgcccaGgcGGCCGUGg -3'
miRNA:   3'- aCGGCCUCCGCGCgCA---------------CaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 97056 0.73 0.29166
Target:  5'- cUGCUGGAGGCGCaugaCGUGUUucaGGCCa-- -3'
miRNA:   3'- -ACGGCCUCCGCGc---GCACAA---CCGGcac -5'
5152 3' -62 NC_001798.1 + 4364 0.72 0.311794
Target:  5'- gGCgGGGGGCGCGCcggcggcgGUGgUGGUgGUGg -3'
miRNA:   3'- aCGgCCUCCGCGCG--------CACaACCGgCAC- -5'
5152 3' -62 NC_001798.1 + 90391 0.72 0.325794
Target:  5'- cGUCGGGGG-GCGCG-GUUgGGCCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGCaCAA-CCGGCac -5'
5152 3' -62 NC_001798.1 + 1652 0.71 0.370549
Target:  5'- cGUCGGgguacAGGCGCGCGUGcgcGGCCu-- -3'
miRNA:   3'- aCGGCC-----UCCGCGCGCACaa-CCGGcac -5'
5152 3' -62 NC_001798.1 + 2411 0.71 0.378406
Target:  5'- gGCCGaGGGCGCcgGCGUG-UGGCUGg- -3'
miRNA:   3'- aCGGCcUCCGCG--CGCACaACCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.