miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 140202 0.7 0.402636
Target:  5'- gGCCGGugcuGGUGUGCGUGggGucGCCGa- -3'
miRNA:   3'- aCGGCCu---CCGCGCGCACaaC--CGGCac -5'
5152 3' -62 NC_001798.1 + 97478 0.7 0.402636
Target:  5'- gGCCGGcGGCGCGaccggGggGGCCGa- -3'
miRNA:   3'- aCGGCCuCCGCGCgca--CaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 43264 0.7 0.426972
Target:  5'- cGCCGGGGGCGuCGUgcccugcugcuccGUGgcGGCCa-- -3'
miRNA:   3'- aCGGCCUCCGC-GCG-------------CACaaCCGGcac -5'
5152 3' -62 NC_001798.1 + 34084 0.7 0.427827
Target:  5'- uUGuuGGGGGggggugaccgGCGCGUGggGGCgGUGg -3'
miRNA:   3'- -ACggCCUCCg---------CGCGCACaaCCGgCAC- -5'
5152 3' -62 NC_001798.1 + 130360 0.7 0.4347
Target:  5'- cGCCGGugauacagguAGGCGCGCGUGcaccgaagcacGGCCaUGg -3'
miRNA:   3'- aCGGCC----------UCCGCGCGCACaa---------CCGGcAC- -5'
5152 3' -62 NC_001798.1 + 25944 0.69 0.44513
Target:  5'- cGCCGGcAGuGCGC-CGUGcgcUGGCCGg- -3'
miRNA:   3'- aCGGCC-UC-CGCGcGCACa--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 23664 0.69 0.44513
Target:  5'- cGCCGGGccCGCGCGgcggUGGCCGg- -3'
miRNA:   3'- aCGGCCUccGCGCGCaca-ACCGGCac -5'
5152 3' -62 NC_001798.1 + 146756 0.69 0.453927
Target:  5'- cGCCGGAGagcccgagccccGCcCGCGUGUU-GCUGUGg -3'
miRNA:   3'- aCGGCCUC------------CGcGCGCACAAcCGGCAC- -5'
5152 3' -62 NC_001798.1 + 36065 0.69 0.453927
Target:  5'- cUGCCGGAGGCugcggGCGCGggguagguggGUgggcgGGUgGUGg -3'
miRNA:   3'- -ACGGCCUCCG-----CGCGCa---------CAa----CCGgCAC- -5'
5152 3' -62 NC_001798.1 + 134454 0.69 0.453927
Target:  5'- cGCCGaGcaccccGGCGCGCG-GUUGG-CGUGg -3'
miRNA:   3'- aCGGC-Cu-----CCGCGCGCaCAACCgGCAC- -5'
5152 3' -62 NC_001798.1 + 2224 0.69 0.462817
Target:  5'- gGCCcGAGGCGCGCagcg-GGCCGa- -3'
miRNA:   3'- aCGGcCUCCGCGCGcacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 52965 0.69 0.462817
Target:  5'- gUGuCCgGGAGGCGCGCGaccgGGCUGg- -3'
miRNA:   3'- -AC-GG-CCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 70328 0.69 0.462817
Target:  5'- cGgCGGAGGCGCggGCGUGcUGGCa--- -3'
miRNA:   3'- aCgGCCUCCGCG--CGCACaACCGgcac -5'
5152 3' -62 NC_001798.1 + 15059 0.69 0.471798
Target:  5'- gGCCcGGGGCGCGCG-GggGGUgGUu -3'
miRNA:   3'- aCGGcCUCCGCGCGCaCaaCCGgCAc -5'
5152 3' -62 NC_001798.1 + 12707 0.69 0.471798
Target:  5'- uUGCUGGGGGCG-GCGg---GGgCGUGg -3'
miRNA:   3'- -ACGGCCUCCGCgCGCacaaCCgGCAC- -5'
5152 3' -62 NC_001798.1 + 71052 0.69 0.480867
Target:  5'- cGCgaGGAGGUGCGCGUGUcGaCCGc- -3'
miRNA:   3'- aCGg-CCUCCGCGCGCACAaCcGGCac -5'
5152 3' -62 NC_001798.1 + 109327 0.69 0.480867
Target:  5'- cUGCUGGGcuuuuuGGCccacucGCGCGUGcUGGCCGg- -3'
miRNA:   3'- -ACGGCCU------CCG------CGCGCACaACCGGCac -5'
5152 3' -62 NC_001798.1 + 36142 0.69 0.490019
Target:  5'- cGCCGGuGGgGCGCGgcGgcGGUCGg- -3'
miRNA:   3'- aCGGCCuCCgCGCGCa-CaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 111774 0.69 0.490019
Target:  5'- gGuuGGGGGCGCGgGUGc---CCGUGa -3'
miRNA:   3'- aCggCCUCCGCGCgCACaaccGGCAC- -5'
5152 3' -62 NC_001798.1 + 4416 0.69 0.490019
Target:  5'- cGCCGGGGGuCGCgGCGacagGcUGGCCaUGg -3'
miRNA:   3'- aCGGCCUCC-GCG-CGCa---CaACCGGcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.