miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 110992 0.66 0.624522
Target:  5'- cGCCcGucAGGCGCGCGguaugcgUGGCCGc- -3'
miRNA:   3'- aCGGcC--UCCGCGCGCaca----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 71122 0.66 0.622552
Target:  5'- cGCUGauGGCGCGCGUGcggacggacgcGGCCGUc -3'
miRNA:   3'- aCGGCcuCCGCGCGCACaa---------CCGGCAc -5'
5152 3' -62 NC_001798.1 + 52037 0.67 0.608779
Target:  5'- gGcCCGGGGuGCGCGCGcuccuggggcgcgacUGUcgcgUGGCCGc- -3'
miRNA:   3'- aC-GGCCUC-CGCGCGC---------------ACA----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 52586 0.67 0.604849
Target:  5'- cGgUGGucGCGUGCGUGgcccUGGCCGc- -3'
miRNA:   3'- aCgGCCucCGCGCGCACa---ACCGGCac -5'
5152 3' -62 NC_001798.1 + 153603 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153565 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153527 0.67 0.604849
Target:  5'- gGUCGGAGGgGCGUcaGggGGUCGg- -3'
miRNA:   3'- aCGGCCUCCgCGCGcaCaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 100788 0.67 0.604849
Target:  5'- aGUgGGGGGCGgGUGUc--GGCCGUc -3'
miRNA:   3'- aCGgCCUCCGCgCGCAcaaCCGGCAc -5'
5152 3' -62 NC_001798.1 + 42760 0.67 0.595037
Target:  5'- aGaCGGGcGGCGCGCGg---GGCCGa- -3'
miRNA:   3'- aCgGCCU-CCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 151611 0.67 0.595037
Target:  5'- gGCCGGGGGcCGgGCcggGggcgUGGCCGc- -3'
miRNA:   3'- aCGGCCUCC-GCgCGca-Ca---ACCGGCac -5'
5152 3' -62 NC_001798.1 + 154271 0.67 0.595037
Target:  5'- -cCCGGcuGGCGUGCGcagcccgGGCCGUGu -3'
miRNA:   3'- acGGCCu-CCGCGCGCacaa---CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 30950 0.67 0.585251
Target:  5'- gGCgGGGGGCGgGCGgg--GGUCGg- -3'
miRNA:   3'- aCGgCCUCCGCgCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 146028 0.67 0.585251
Target:  5'- aGCCa-AGGCGCG-GUGggGGgCGUGg -3'
miRNA:   3'- aCGGccUCCGCGCgCACaaCCgGCAC- -5'
5152 3' -62 NC_001798.1 + 25317 0.67 0.585251
Target:  5'- cGCCcuGGAGGCcuacuGCGCcccgcgGGCCGUGg -3'
miRNA:   3'- aCGG--CCUCCG-----CGCGcacaa-CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 27605 0.67 0.585251
Target:  5'- gGaaGGGGGCGCGCGg---GGCUGc- -3'
miRNA:   3'- aCggCCUCCGCGCGCacaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 153820 0.67 0.585251
Target:  5'- cGgCGGcAGGCGCgGCGUGcggGGCCu-- -3'
miRNA:   3'- aCgGCC-UCCGCG-CGCACaa-CCGGcac -5'
5152 3' -62 NC_001798.1 + 28659 0.67 0.585251
Target:  5'- cGaCCGGuuccGGCGcCGCGUGgcggcGGCCGa- -3'
miRNA:   3'- aC-GGCCu---CCGC-GCGCACaa---CCGGCac -5'
5152 3' -62 NC_001798.1 + 111643 0.67 0.575496
Target:  5'- cGUCGGGGGCGCucgGCGgGggGGCgGa- -3'
miRNA:   3'- aCGGCCUCCGCG---CGCaCaaCCGgCac -5'
5152 3' -62 NC_001798.1 + 86265 0.67 0.575496
Target:  5'- gGCCGGGGGCGCGgGcGcaccGGCgGg- -3'
miRNA:   3'- aCGGCCUCCGCGCgCaCaa--CCGgCac -5'
5152 3' -62 NC_001798.1 + 77359 0.67 0.575496
Target:  5'- gGCCcuGGAGGCGCGgGg---GGCCa-- -3'
miRNA:   3'- aCGG--CCUCCGCGCgCacaaCCGGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.