miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 3' -62 NC_001798.1 + 39810 0.67 0.575496
Target:  5'- cGCCGGuGGuCGCGgGUGgcGGaUCGUc -3'
miRNA:   3'- aCGGCCuCC-GCGCgCACaaCC-GGCAc -5'
5152 3' -62 NC_001798.1 + 50948 0.67 0.57355
Target:  5'- cGCCGGAGGCGCGCcuccacccGGUCc-- -3'
miRNA:   3'- aCGGCCUCCGCGCGcacaa---CCGGcac -5'
5152 3' -62 NC_001798.1 + 26492 0.67 0.565779
Target:  5'- gGCCGcGGGcCGCGCGgggacgGUgcUGGCCGc- -3'
miRNA:   3'- aCGGCcUCC-GCGCGCa-----CA--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 135789 0.67 0.565779
Target:  5'- cGCCGGAGGagGC-CGUGUgcgcGGCCc-- -3'
miRNA:   3'- aCGGCCUCCg-CGcGCACAa---CCGGcac -5'
5152 3' -62 NC_001798.1 + 15456 0.67 0.55707
Target:  5'- gGCgGGGGGuCGCGUGgguagacgugggcggGggGGUCGUGg -3'
miRNA:   3'- aCGgCCUCC-GCGCGCa--------------CaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 56760 0.67 0.55514
Target:  5'- aGCUGGcaggugaAGGUGCGCG-GggGGCCcUGg -3'
miRNA:   3'- aCGGCC-------UCCGCGCGCaCaaCCGGcAC- -5'
5152 3' -62 NC_001798.1 + 38610 0.68 0.546479
Target:  5'- uUGCCgugcacauauaaGGGGGCGauaGUGUGacUGGCCGUc -3'
miRNA:   3'- -ACGG------------CCUCCGCg--CGCACa-ACCGGCAc -5'
5152 3' -62 NC_001798.1 + 31341 0.68 0.546479
Target:  5'- gGCgGGGGGCGCGCGca--GGCgCGg- -3'
miRNA:   3'- aCGgCCUCCGCGCGCacaaCCG-GCac -5'
5152 3' -62 NC_001798.1 + 40143 0.68 0.546479
Target:  5'- gGCgGGuguccuccgaGGGgGCGCGUGUcggaagagagUGGCCGg- -3'
miRNA:   3'- aCGgCC----------UCCgCGCGCACA----------ACCGGCac -5'
5152 3' -62 NC_001798.1 + 3267 0.68 0.546479
Target:  5'- aGCCGGcGGGCaccGCGCGcucGUcGGCCGg- -3'
miRNA:   3'- aCGGCC-UCCG---CGCGCa--CAaCCGGCac -5'
5152 3' -62 NC_001798.1 + 29541 0.68 0.536906
Target:  5'- cGCCGG-GGCGCGCGgcuauUGggGGaauCGUa -3'
miRNA:   3'- aCGGCCuCCGCGCGC-----ACaaCCg--GCAc -5'
5152 3' -62 NC_001798.1 + 15346 0.68 0.534999
Target:  5'- aGCgGGGGGCGagGCG-GUgaggggggaaucGGCCGUGg -3'
miRNA:   3'- aCGgCCUCCGCg-CGCaCAa-----------CCGGCAC- -5'
5152 3' -62 NC_001798.1 + 150000 0.68 0.527393
Target:  5'- cGCCGG-GGCGaGCGgcccgUGGCCGc- -3'
miRNA:   3'- aCGGCCuCCGCgCGCaca--ACCGGCac -5'
5152 3' -62 NC_001798.1 + 110254 0.68 0.518885
Target:  5'- gGCUGGugcgcaccgaaaaccGGCGCGaccucggccuCGUGggGGCCGUGu -3'
miRNA:   3'- aCGGCCu--------------CCGCGC----------GCACaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 39460 0.68 0.508561
Target:  5'- cGCCaucagcggaggGGGGGCcugGCGCGUGccucgUGGCCGc- -3'
miRNA:   3'- aCGG-----------CCUCCG---CGCGCACa----ACCGGCac -5'
5152 3' -62 NC_001798.1 + 79127 0.68 0.499252
Target:  5'- cGCCGa--GCGCGCGga--GGCCGUGg -3'
miRNA:   3'- aCGGCcucCGCGCGCacaaCCGGCAC- -5'
5152 3' -62 NC_001798.1 + 24185 0.68 0.499252
Target:  5'- gGCUGGGgccuGGCGCaCGUGgcGGCCGc- -3'
miRNA:   3'- aCGGCCU----CCGCGcGCACaaCCGGCac -5'
5152 3' -62 NC_001798.1 + 4416 0.69 0.490019
Target:  5'- cGCCGGGGGuCGCgGCGacagGcUGGCCaUGg -3'
miRNA:   3'- aCGGCCUCC-GCG-CGCa---CaACCGGcAC- -5'
5152 3' -62 NC_001798.1 + 111774 0.69 0.490019
Target:  5'- gGuuGGGGGCGCGgGUGc---CCGUGa -3'
miRNA:   3'- aCggCCUCCGCGCgCACaaccGGCAC- -5'
5152 3' -62 NC_001798.1 + 36142 0.69 0.490019
Target:  5'- cGCCGGuGGgGCGCGgcGgcGGUCGg- -3'
miRNA:   3'- aCGGCCuCCgCGCGCa-CaaCCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.