miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 5' -56.1 NC_001798.1 + 120533 1.11 0.002303
Target:  5'- gUCCACGUACACGUACAGCUCGGGGGCc -3'
miRNA:   3'- -AGGUGCAUGUGCAUGUCGAGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 97456 0.83 0.151864
Target:  5'- gCCGCGUGCugGcGCGGCU-GGGGGCc -3'
miRNA:   3'- aGGUGCAUGugCaUGUCGAgCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 97717 0.8 0.254507
Target:  5'- gCUGCGUGCGCGaGCAGCgCGGGGaGCu -3'
miRNA:   3'- aGGUGCAUGUGCaUGUCGaGCCCC-CG- -5'
5152 5' -56.1 NC_001798.1 + 1261 0.8 0.260596
Target:  5'- cCCGCGUcCGCGUcgucgcGCAGCaccagCGGGGGCg -3'
miRNA:   3'- aGGUGCAuGUGCA------UGUCGa----GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 132818 0.78 0.335516
Target:  5'- aCUGCaUGCACGUGCGGUUCuGGGGCc -3'
miRNA:   3'- aGGUGcAUGUGCAUGUCGAGcCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 116496 0.78 0.335516
Target:  5'- aUUACGUGCugGUGcCGGCcuucucgCGGGGGCg -3'
miRNA:   3'- aGGUGCAUGugCAU-GUCGa------GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 153785 0.76 0.407689
Target:  5'- cCCGCGcuccuUGCGCGgcgGCGGCg-GGGGGCa -3'
miRNA:   3'- aGGUGC-----AUGUGCa--UGUCGagCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 125304 0.76 0.424998
Target:  5'- aCCGCccGCAC---CAGCUCGGGGGCc -3'
miRNA:   3'- aGGUGcaUGUGcauGUCGAGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 36498 0.75 0.460887
Target:  5'- -gCGCG-ACGCGgGCGGCcgggCGGGGGCg -3'
miRNA:   3'- agGUGCaUGUGCaUGUCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 40418 0.75 0.479423
Target:  5'- gUCCGCcuuCGCGUACAcGCguaggCGGGGGUg -3'
miRNA:   3'- -AGGUGcauGUGCAUGU-CGa----GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 108137 0.75 0.479423
Target:  5'- gUCCugGUGgGCGUu--GC-CGGGGGCc -3'
miRNA:   3'- -AGGugCAUgUGCAuguCGaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 77519 0.74 0.488827
Target:  5'- cUCGCGggGCACGagGCugGGUUCGGGGGCc -3'
miRNA:   3'- aGGUGCa-UGUGCa-UG--UCGAGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 31142 0.74 0.498316
Target:  5'- gCCcCG-GCGCGgggGCGGCggugCGGGGGCg -3'
miRNA:   3'- aGGuGCaUGUGCa--UGUCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 95659 0.74 0.505008
Target:  5'- aCCACGcgGCGuCGUucggcgguuuggcgGCGGCggCGGGGGCg -3'
miRNA:   3'- aGGUGCa-UGU-GCA--------------UGUCGa-GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 36533 0.74 0.507887
Target:  5'- gCCggGCGgggGCGCGcgGCGGCcgggCGGGGGCg -3'
miRNA:   3'- aGG--UGCa--UGUGCa-UGUCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 36617 0.74 0.507887
Target:  5'- gCCggGCGgggGCGCGcgGCGGCcgggCGGGGGCg -3'
miRNA:   3'- aGG--UGCa--UGUGCa-UGUCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 36575 0.74 0.507887
Target:  5'- gCCggGCGgggGCGCGcgGCGGCcgggCGGGGGCg -3'
miRNA:   3'- aGG--UGCa--UGUGCa-UGUCGa---GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 96334 0.74 0.517535
Target:  5'- cUCCAgGUGCGCGUGCuGCggCGgcaccugcggccGGGGCu -3'
miRNA:   3'- -AGGUgCAUGUGCAUGuCGa-GC------------CCCCG- -5'
5152 5' -56.1 NC_001798.1 + 149735 0.74 0.517535
Target:  5'- cCCGCG-GCGCa-GCAGCgCGGGGGCc -3'
miRNA:   3'- aGGUGCaUGUGcaUGUCGaGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 90918 0.74 0.520444
Target:  5'- uUCCACGUgcuccaggaugucguACACGUggaagacggugACGGUggggucgaaccccUCGGGGGCa -3'
miRNA:   3'- -AGGUGCA---------------UGUGCA-----------UGUCG-------------AGCCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.