miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5152 5' -56.1 NC_001798.1 + 1225 0.71 0.687785
Target:  5'- cCCGCGgccgACGCc--CAGCguaucugCGGGGGCg -3'
miRNA:   3'- aGGUGCa---UGUGcauGUCGa------GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 1261 0.8 0.260596
Target:  5'- cCCGCGUcCGCGUcgucgcGCAGCaccagCGGGGGCg -3'
miRNA:   3'- aGGUGCAuGUGCA------UGUCGa----GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 1798 0.67 0.897659
Target:  5'- gCCAgGUAgGCGUGCugccgcgagaccacgGGCccgUCGGcGGGCc -3'
miRNA:   3'- aGGUgCAUgUGCAUG---------------UCG---AGCC-CCCG- -5'
5152 5' -56.1 NC_001798.1 + 1958 0.69 0.765664
Target:  5'- -gCACGcccUGCGCGccCAGCgccgagacgUCGGGGGCg -3'
miRNA:   3'- agGUGC---AUGUGCauGUCG---------AGCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 2163 0.69 0.802099
Target:  5'- aCCACGcGCACGUccucCGGgUCGGGcaccuGGCg -3'
miRNA:   3'- aGGUGCaUGUGCAu---GUCgAGCCC-----CCG- -5'
5152 5' -56.1 NC_001798.1 + 2518 0.7 0.746713
Target:  5'- gCCGCGgcgGCgGCGU-CGGCggggCGGGGGg -3'
miRNA:   3'- aGGUGCa--UG-UGCAuGUCGa---GCCCCCg -5'
5152 5' -56.1 NC_001798.1 + 2571 0.7 0.706712
Target:  5'- gCCGCGgggcgggGgGCGUccgcGCGGCUCuucuucgGGGGGCg -3'
miRNA:   3'- aGGUGCa------UgUGCA----UGUCGAG-------CCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 2706 0.67 0.87453
Target:  5'- gCCGCGgcgACGguguCGgcCAGCa-GGGGGCg -3'
miRNA:   3'- aGGUGCa--UGU----GCauGUCGagCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 2968 0.68 0.844197
Target:  5'- -gCGCGUcgGCGUGCGGCg-GGGcGGCc -3'
miRNA:   3'- agGUGCAugUGCAUGUCGagCCC-CCG- -5'
5152 5' -56.1 NC_001798.1 + 3413 0.66 0.924779
Target:  5'- gCCGCGUucucGCGCGc-CAGCa-GGGGcGCg -3'
miRNA:   3'- aGGUGCA----UGUGCauGUCGagCCCC-CG- -5'
5152 5' -56.1 NC_001798.1 + 3755 0.68 0.852079
Target:  5'- gCCGCGU-CGCc--CAGCUCGGGcGCc -3'
miRNA:   3'- aGGUGCAuGUGcauGUCGAGCCCcCG- -5'
5152 5' -56.1 NC_001798.1 + 3866 0.66 0.901474
Target:  5'- cCCAgCccGC-CGUACAGCacgcgcccCGGGGGCg -3'
miRNA:   3'- aGGU-GcaUGuGCAUGUCGa-------GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 3971 0.73 0.556799
Target:  5'- gCCGCGUcgGCGUcCAGCUCGaccgccGGGGCc -3'
miRNA:   3'- aGGUGCAugUGCAuGUCGAGC------CCCCG- -5'
5152 5' -56.1 NC_001798.1 + 4198 0.71 0.687785
Target:  5'- cCCGCG---GCGUggucuGCGGCgcuggCGGGGGCg -3'
miRNA:   3'- aGGUGCaugUGCA-----UGUCGa----GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 5608 0.68 0.819446
Target:  5'- -gUugGUcCGCGgGCGGCUCcgccccaaaGGGGGCg -3'
miRNA:   3'- agGugCAuGUGCaUGUCGAG---------CCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 9694 0.67 0.87453
Target:  5'- cUCACGUGCggGCGgguggGCucgacgGGCUCGGGcuGGCg -3'
miRNA:   3'- aGGUGCAUG--UGCa----UG------UCGAGCCC--CCG- -5'
5152 5' -56.1 NC_001798.1 + 9819 0.7 0.753394
Target:  5'- gUCCACGUACACcacgcacagguagaGgccgGCGuGCUgGGGGGa -3'
miRNA:   3'- -AGGUGCAUGUG--------------Ca---UGU-CGAgCCCCCg -5'
5152 5' -56.1 NC_001798.1 + 12062 0.71 0.697771
Target:  5'- aCCACGUguacaACGCGgggGCAGUgguuccccaGGGGGUa -3'
miRNA:   3'- aGGUGCA-----UGUGCa--UGUCGag-------CCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 12701 0.66 0.913591
Target:  5'- cCCGgGuUGCugGg--GGCggCGGGGGCg -3'
miRNA:   3'- aGGUgC-AUGugCaugUCGa-GCCCCCG- -5'
5152 5' -56.1 NC_001798.1 + 15821 0.67 0.888444
Target:  5'- gCCAUGagGCGCcgccCGGUUCGGGGGg -3'
miRNA:   3'- aGGUGCa-UGUGcau-GUCGAGCCCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.